Browse Element(s) Details


Os.36319.1.S2_at

Description gb:C99566
DB_XREF= gi:3762318
DB_XREF=C99566
CLONE=E20561_3Z
TID=Os.36319.1
CNT=5
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.36319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.21 (P0408C03.21), mRNA
FL= gb:AK063699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g623605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36319.1.S2_at--584--5411Chr01:36416481..36416505 (25 bp)
GAAGCGTGGATCTTTCTGGCTCGGC
LOC_Os01g62360
Os.36319.1.S2_at--82--7151Chr01:36416417..36416441 (25 bp)
GTCTTCCTTCACTTCTTGTGATTTC
LOC_Os01g62360
Os.36319.1.S2_at--1088--8591Chr01:36416279..36416425 (25 bp)
TGTGATTTCGACACAGAGTCGGCAT
LOC_Os01g62360
Os.36319.1.S2_at--136--2151Chr01:36416267..36416287 (21 bp)
ACAGAGTCGGCATGGTCATTGTCCC
LOC_Os01g62360
Os.36319.1.S2_at--192--5011Chr01:36416258..36416282 (25 bp)
GCATGGTCATTGTCCCGCCGTGGAG
LOC_Os01g62360
Os.36319.1.S2_at--121--3971Chr01:36415949..36415973 (25 bp)
CGGTTTCGCGTTGCATTTCGATTCT
NONE
Os.36319.1.S2_at--781--4951Chr01:36415937..36415961 (25 bp)
GCATTTCGATTCTTCTCATTTTCCA
NONE
Os.36319.1.S2_at--382--3731Chr01:36415923..36415947 (25 bp)
CTCATTTTCCAGAGAACCCGGGTCA
NONE
Os.36319.1.S2_at--1119--7211Chr01:36415896..36415920 (25 bp)
GTCGAATCTTTCATGATTCTTCACA
NONE
Os.36319.1.S2_at--274--6571Chr01:36415882..36415906 (25 bp)
GATTCTTCACATTGATCTCTGCTAC
NONE
Os.36319.1.S2_at--706--9691Chr01:36415876..36415900 (25 bp)
TCACATTGATCTCTGCTACGTTTGT
NONE
Target Sequence 
GAAGCGTGGATCTTTCTGGCTCGGCCTCCTTCAGCACGGCCTTCACTTCGTCTCACTGCGCTTCGTCTTCCTTCACTTCT
TGTGATTTCGACACAGAGTCGGCATGGTCATTGTCCCGCCGTGGAGGCGGCGGCGCCGGCGGCGGGATGACGCTGGCGAG
CCTGATCGGCCTGGTGGACGCCATGGAGAGCCGTAGCCGGCGGCGCCGGAGCGCGAGGGCGACGAGCAAGAGCGGCAAGG
TCAGGGCGCTGCTGCTGTCGCTCTGCCTCCGNAGCCACCTGNAGAANCGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCT
CGAGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGC
TCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGA
TTCTTCACATTGATCTCTGCTACGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36319.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis