Browse Element(s) Details


Os.36319.1.S1_x_at

Description gb:AK063699.1
DB_XREF= gi:32973717
TID=Os.36319.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.21 (P0408C03.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G07, full insert sequence.
FL= gb:AK063699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6236010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36319.1.S1_x_at--749--8471Chr01:36418443..36418467 (25 bp)
TGGCGCACGCGCACGAGCAAAGTAA
NONE
Os.36319.1.S1_x_at--618--3931Chr01:36418276..36418300 (25 bp)
CGGCGATGTCGCTGCTGATGTAGCA
LOC_Os01g62360
Os.36319.1.S1_x_at--663--8871Chr01:36418261..36418285 (25 bp)
TGATGTAGCAGCACAACCACCACCA
LOC_Os01g62360
Os.36319.1.S1_x_at--265--7231Chr01:36418209..36418233 (25 bp)
GTCGACATGGCAGCTGCAGCAAGGC
LOC_Os01g62360
Os.36319.1.S1_x_at--227--4951Chr01:36418179..36418203 (25 bp)
GCATCTCCGCGGCTAAAGGTTCCTC
LOC_Os01g62360
Os.36319.1.S1_x_at--565--5792Chr04:17693967..17693991 (25 bp)
GACGCAGCAGCTCTTGCAGGAGTTC
NONE
Os.36319.1.S1_x_at--191--1591Chr01:36418141..36418165 (25 bp)
AGCTCTTGCAGGAGTTCTGCAGCCT
LOC_Os01g62360
Os.36319.1.S1_x_at--680--2711Chr01:36418070..36418094 (25 bp)
AAGCAGGCGCAAGAAGACGCCGTCG
LOC_Os01g62360
Os.36319.1.S1_x_at--800--5791Chr01:36418014..36418038 (25 bp)
GACGCAGATCCAGTCCATGGACGGG
LOC_Os01g62360
Os.36319.1.S1_x_at--763--2811Chr01:36417965..36417989 (25 bp)
AAGATTTACATTTACCCCATGCTCG
LOC_Os01g62360
Os.36319.1.S1_x_at--850--10471Chr01:36417960..36417984 (25 bp)
TTACATTTACCCCATGCTCGAAGAG
LOC_Os01g62360
Target Sequence 
TGGCGCACGCGCACGAGCAAAGTAAGGGTGTGGGCGCGCTCGGCGGCGGCGGCGTCGATGATGGAGGCGCGACTGCCGAC
GGTCCACTTCGGCGGGCTCGGCGAGCTTACCACCACCAACACCGCAGAGCCAAGCGCCGCTGTCCCTCTCGCTTCACAGG
CCGGAGGCGGCGATGTCGCTGCTGATGTAGCAGCACAACCACCACCACCAGCCGTCGCCGGCGGCGGGCGCGGCGTCGAC
ATGGCAGCTGCAGCAAGGCGCGTGGCATCTCCGCGGCTAAAGGTTCCTCCTCCCGACGCAGCAGCTCTTGCAGGAGTTCT
GCAGCCTCCCCATGAAGAGCACCACCAGCCCATCGTCGGCAAGCAAGGNCACCCAAGCAGGCGCAAGAAGACGCCGTCGG
TGGCGGAGGCTCGTCGTCGTGGACCGCGCCGACGCAGATCCAGTCCATGGACGGGGGCGAGCTGCAGCGGCTCAAGGGNC
AAGATTTACATTTACCCCATGCTCGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36319.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis