Browse Element(s) Details


Os.10959.1.S2_at

Description gb:AK068266.1
DB_XREF= gi:32978284
TID=Os.10959.1
CNT=297
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149A10, full insert sequence.
FL= gb:AK070257.1 gb:AK068266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1947011/11Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os04g169801/11hypothetical protein
LOC_Os12g084301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g293901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g284601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19460Os.14919.1.S1_at5/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19460OsAffx.29313.1.S1_at1/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19470Os.10959.1.S2_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.10959.1.S1_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.40291.1.A1_x_at1/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19480NANA12+11324158..11330239retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19490NANA12+11331755..11333193retrotransposon protein, putative, unclassified
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10959.1.S2_at--478--651Chr12:11319426..11319450 (25 bp)
ATGCAAGCCCAAAAACCTGCGAAAT
LOC_Os12g19470
Os.10959.1.S2_at--502--10691Chr12:11319497..11319521 (25 bp)
TTGGGCCAAGCCAGGTTTCGGCCAA
LOC_Os12g19470
Os.10959.1.S2_at--137--8451Chr12:11319516..11319540 (25 bp)
GGCCAAATCCTGATCATCGCTGTTG
LOC_Os12g19470
Os.10959.1.S2_at--1093--411Chr12:11319528..11319552 (25 bp)
ATCATCGCTGTTGATCTCAGGGTTT
LOC_Os12g19470
Os.10959.1.S2_at--952--6392Chr12:11319540..11319564 (25 bp)
GATCTCAGGGTTTGGCATGGACGCT
LOC_Os12g19470
Os.10959.1.S2_at--590--10831Chr12:11319551..11319575 (25 bp)
TTGGCATGGACGCTCTTGATTTACT
LOC_Os12g19470
Os.10959.1.S2_at--1131--4811Chr12:11319562..11319586 (25 bp)
GCTCTTGATTTACTCCTGATGGCAG
LOC_Os12g19470
Os.10959.1.S2_at--1109--1071Chr12:11319591..11319615 (25 bp)
AGGGCATTTCCGATCATTCGCATGC
LOC_Os12g19470
Os.10959.1.S2_at--1118--58931Chr12:11319645..11319669 (25 bp)
GAGCTCTCATCCTCACTTCATATCA
LOC_Os12g19470
Os.10959.1.S2_at--501--10173Chr12:11319665..11319689 (25 bp)
TATCACACACTCCAATCTTGAGCTG
LOC_Os12g19470
Os.10959.1.S2_at--473--6071Chr12:11319773..11319797 (25 bp)
GAGTTATCGGTGATCCTTTTCTATT
LOC_Os12g19470
Target Sequence 
ATGCAAGCCCAAAAACCTGCGAAATGGATAAGGCAGACTGAGAAGGAGGCCCAGGCCAAAACTTGGGCCAGTTGGGCCAA
GCCAGGTTTCGGCCAAATCCTGATCATCGCTGTTGATCTCAGGGTTTGGCATGGACGCTCTTGATTTACTCCTGATGGCA
GTTNCAGGGCATTTCCGATCATTCGCATGCTCTACAACCNTCATACCTACNTATTTAAGGAGCTCTCATCCTCACTTCAT
ATCACACACTCCAATCTTGAGCTGAATTATAAGAGGCTCTNTTGTATTTTATTGTATACTAGAATTAGGGAAAGATTAAG
GTCGTAGAAGAAATCGGAGGAATTCCGGAGTTATCGGTGATCCTTTTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10959.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis