Browse Element(s) Details


Os.10962.2.S1_x_at

Description gb:AJ575228.1
DB_XREF= gi:46367663
TID=Os.10962.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) partial mRNA for TA4 protein.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3805011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed
LOC_Os02g38050Os.10962.2.S1_x_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38050Os.10962.1.S1_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38060OsAffx.2904.1.S1_at11/112+22984837..22989130Cerebral protein 1, putative
LOC_Os02g38069NANA2+22990739..22991060NA
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10962.2.S1_x_at--710--5871Chr02:22976988..22977012 (25 bp)
GAGCCTGTGGATCAAGTCTTCAACC
LOC_Os02g38050
Os.10962.2.S1_x_at--38--10791Chr02:22976925..22976949 (25 bp)
TTGATACACCACCAGATTGACGAGC
LOC_Os02g38050
Os.10962.2.S1_x_at--968--51Chr02:22976910..22976934 (25 bp)
ATTGACGAGCCCAAGAATCCTGAGC
LOC_Os02g38050
Os.10962.2.S1_x_at--824--51Chr02:22976832..22976856 (25 bp)
ATTGATGTTGATGTTCCCTCCAGTT
LOC_Os02g38050
Os.10962.2.S1_x_at--917--10811Chr02:22976792..22976816 (25 bp)
TTGTGCCTGTCTTTGATGAGCCTGC
LOC_Os02g38050
Os.10962.2.S1_x_at--125--3271Chr02:22976738..22976762 (25 bp)
CAACTGTTAATGTGCCTGCTGGTAA
LOC_Os02g38050
Os.10962.2.S1_x_at--434--9131Chr02:22976722..22976746 (25 bp)
TGCTGGTAATGCACCTGCGTCTGTT
LOC_Os02g38050
Os.10962.2.S1_x_at--1086--4011Chr02:22976705..22976729 (25 bp)
CGTCTGTTGGTGCATCATCATCTGA
LOC_Os02g38050
Os.10962.2.S1_x_at--396--9851Chr02:22976574..22976598 (25 bp)
TACAACCTGGAGCAGTCTGTCGATG
LOC_Os02g38050
Os.10962.2.S1_x_at--561--1151Chr02:22976561..22976585 (25 bp)
AGTCTGTCGATGATCTCTGTGGCGT
LOC_Os02g38050
Os.10962.2.S1_x_at--410--2951Chr02:22976531..22976555 (25 bp)
AATGGGACCCTCTCCTGGAGGAGTT
LOC_Os02g38050
Target Sequence 
GAGCCTGTGGATCAAGTCTTCAACCAACATGTCAATAGCACAAACAAGGAGTTACTTGAACATTTGATACACCACCAGAT
TGACGAGCCCAAGAATCCTGAGCCTGCTCCATTACCTGTGCCCATTGTTTCTTCCACAACATCTCTTCACCCCATCATTG
ATGTTGATGTTCCCTCCAGTTCAACTGCTGCTGCTTTTGTGCCTGTCTTTGATGAGCCTGCGCCTGAACCTGCTGTGACT
CCTGTGCCTCCAACTGTTAATGTGCCTGCTGGTAATGCACCTGCGTCTGTTGGTGCATCATCATCTGATCATCATGGCAT
TGACAATCTCACAGAAGAGAAACTGCTGAAGGAACTTGAGGAAATGGGTTTTAGGCAGGTCGATCTGAACAAGGAGATAC
TCAGGCAGAACAAGTACAACCTGGAGCAGTCTGTCGATGATCTCTGTGGCGTCANCGAATGGGACCCTCTCCTGGAGGAG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10962.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis