Browse Element(s) Details


Os.10964.1.S1_at

Description gb:AK066689.1
DB_XREF= gi:32976707
TID=Os.10964.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073J06, full insert sequence.
FL= gb:AK066689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2792010/11phox domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10964.1.S1_at--1148--6751NONE
GTTACAAGCCAAGCTGCATACGCTG
NONE
Os.10964.1.S1_at--398--5771Chr05:16218155..16218179 (25 bp)
GACGAGTGGATACGCCCGAAGATCT
LOC_Os05g27920
Os.10964.1.S1_at--1100--1531Chr05:16218199..16218223 (25 bp)
AGCATTCACAACTTTTGCCCGTCTT
LOC_Os05g27920
Os.10964.1.S1_at--339--7151Chr05:16218219..16218243 (25 bp)
GTCTTCTCTTGGTTGGCACATGTGA
LOC_Os05g27920
Os.10964.1.S1_at--658--10151Chr05:16218350..16218374 (25 bp)
TATCGGGAGTACAGACGCACATCGT
LOC_Os05g27920
Os.10964.1.S1_at--479--1991Chr05:16218389..16218413 (25 bp)
ACTGCGCATACGATTGGAGCTGCCT
LOC_Os05g27920
Os.10964.1.S1_at--960--9171Chr05:16218409..16218433 (25 bp)
TGCCTGCCTGCTTGGTTAACTTCTG
LOC_Os05g27920
Os.10964.1.S1_at--19--5151Chr05:16218433..16218457 (25 bp)
GCAACGTTTGTTCAGCTTAGTCAGC
LOC_Os05g27920
Os.10964.1.S1_at--441--7111Chr05:16218452..16218476 (25 bp)
GTCAGCATGGTTTTGTTTCCCTATT
LOC_Os05g27920
Os.10964.1.S1_at--960--9311Chr05:16218469..16218493 (25 bp)
TCCCTATTAGGATCGGTTTGCAAGT
LOC_Os05g27920
Os.10964.1.S1_at--1064--1151Chr05:16218491..16218515 (25 bp)
AGTACCTTAAGGTCGCTTGCTAAAT
LOC_Os05g27920
Target Sequence 
GTTACAAGCCAAGCTGCATACGCTGAGAAGATCGTGGAGGGTTGGGAGACAGTTGCAGAGGAGACGAGTGGATACGCCCG
AAGATCTGATAACAACATAGCGTGGTAGCATTCACAACTTTTGCCCGTCTTCTCTTGGTTGGCACATGTGAGTGTGTATG
TACAATGTGTAACCTAGGATGGTGAAGGCCAAAAGTAGAAGAAAGACNNNNCTAATTCAATTTGTTTTTCATTTATTTAA
AGAATATTGGCGTAGTTCAACTATCGGGAGTACAGACGCACATCGTCACACTACTGCCGTACTGCGCATACGATTGGAGC
TGCCTGCCTGCTTGGTTAACTTCTGCAACGTTTGTTCAGCTTAGTCAGCATGGTTTTGTTTCCCTATTAGGATCGGTTTG
CAAGTACCTTAAGGTCGCTTGCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis