Browse Element(s) Details


Os.10978.1.S1_at

Description gb:AK099039.1
DB_XREF= gi:32984248
TID=Os.10978.1
CNT=52
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131C14, full insert sequence.
FL= gb:AK061867.1 gb:AK099039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3224011/11Eukaryotic translation initiation factor 5A-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10978.1.S1_at--170--1771Chr12:19436642..19436666 (25 bp)
ACCTGGTGGTGACTGTTATGTCTGC
LOC_Os12g32240
Os.10978.1.S1_at--70--4571Chr12:19436687..19436711 (25 bp)
GCGCGCTGAAGGACATCGGCCCGAA
LOC_Os12g32240
Os.10978.1.S1_at--1104--5311Chr12:19436709..19436733 (25 bp)
GAAGTAAACCTCACCTGTTCCATGT
LOC_Os12g32240
Os.10978.1.S1_at--1070--1751Chr12:19436721..19436745 (25 bp)
ACCTGTTCCATGTGATTACTACTGA
LOC_Os12g32240
Os.10978.1.S1_at--431--4171Chr12:19436844..19436868 (25 bp)
CGCCAGTCAGGCTCTTATTTATCTG
LOC_Os12g32240
Os.10978.1.S1_at--253--9551Chr12:19436856..19436880 (25 bp)
TCTTATTTATCTGGGTCTCGTCGTC
LOC_Os12g32240
Os.10978.1.S1_at--83--7211Chr12:19436875..19436899 (25 bp)
GTCGTCGATTCACTGTCCTAAATTT
LOC_Os12g32240
Os.10978.1.S1_at--20--7271Chr12:19436889..19436913 (25 bp)
GTCCTAAATTTCCTGAGTTCCTGTA
LOC_Os12g32240
Os.10978.1.S1_at--228--8911Chr12:19437027..19437051 (25 bp)
TGAGACTTTGTTGTGCTGTCACCAT
LOC_Os12g32240
Os.10978.1.S1_at--370--7111Chr12:19437044..19437068 (25 bp)
GTCACCATGACCACTGCTATTAGCA
LOC_Os12g32240
Os.10978.1.S1_at--997--1191Chr12:19437090..19437114 (25 bp)
AGTTATACCAAAAGCTTCTCCCTGC
LOC_Os12g32240
Target Sequence 
ACCTGGTGGTGACTGTTATGTCTGCCATGGGAGAGGAGCAGATCTGCGCGCTGAAGGACATCGGCCCGAAGTAAACCTCA
CCTGTTCCATGTGATTACTACTGAACTTTCAGTTATGATCGGTTTGGGTATGTAGGAACAAGGATTCTCTTAAAACATAC
AGAGTCACAACCATTAAGGAATTGTATCACAAAACTCGTCCCCGCCAGTCAGGCTCTTATTTATCTGGGTCTCGTCGTCG
ATTCACTGTCCTAAATTTCCTGAGTTCCTGTACCCCTAAACCACCATCCCTAGACGTTTTGTTAACCCTTTGGGTATTTG
GTAGCAACTTTCATTGTGGAGTTGGATTGTGTGCTTAAGGTGAAAATATCATTTGTGATAAACCATGAGACTTTGTTGTG
CTGTCACCATGACCACTGCTATTAGCATCTGCAGATGCAACTTTTGACAGTTATACCAAAAGCTTCTCCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis