Browse Element(s) Details

Os.11043.2.S1_at

Description

gb:AK059401.1
DB_XREF= gi:32969419
TID=Os.11043.2
CNT=38
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B04, full insert sequence.
FL= gb:AK059401.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g24690	9/11	60S ribosomal protein L34, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g24640	Os.8268.1.S1_at	11/11	9	+	14665246..14666808	pentatricopeptide, putative, expressed
LOC_Os09g24650	Os.16405.1.S1_at	11/11	9	+	14670645..14675767	Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660	Os.47978.1.A1_at	11/11	9	+	14676524..14680075	zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670	Os.5442.1.S1_at	11/11	9	+	14680406..14686126	CAAX amino terminal protease family protein
LOC_Os09g24670	OsAffx.17879.1.S1_at	11/11	9	+	14680406..14686126	CAAX amino terminal protease family protein
LOC_Os09g24680	OsAffx.6387.1.S1_at	11/11	9	+	14686747..14689179	pentatricopeptide, putative
LOC_Os09g24690	Os.11043.1.S1_x_at	11/11	9	+	14690168..14692120	60S ribosomal protein L34, putative, expressed
LOC_Os09g24690	Os.11043.2.S1_at	9/11	9	+	14690168..14692120	60S ribosomal protein L34, putative, expressed
LOC_Os09g24700	Os.5722.1.S1_at	11/11	9	+	14693433..14698067	expressed protein
LOC_Os09g24700	Os.5722.2.S1_at	11/11	9	+	14693433..14698067	expressed protein
LOC_Os09g24710	Os.38084.2.S1_x_at	11/11	9	+	14710642..14715764	hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710	Os.38084.1.S1_at	10/11	9	+	14710642..14715764	hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0007046	biological_process	ribosome biogenesis
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11043.2.S1_at--53--707	1	Chr09:14691825..14691964 (25 bp)	GTCAAGACTCCAGGTGGCAAGCTCG	LOC_Os09g24690
Os.11043.2.S1_at--1111--275	1	Chr09:14691822..14691961 (25 bp)	AAGACTCCAGGTGGCAAGCTCGTGT	LOC_Os09g24690
Os.11043.2.S1_at--1130--571	1	Chr09:14691820..14691959 (25 bp)	GACTCCAGGTGGCAAGCTCGTGTAC	LOC_Os09g24690
Os.11043.2.S1_at--408--347	1	Chr09:14691815..14691839 (25 bp)	CAGGTGGCAAGCTCGTGTACCAGTA	LOC_Os09g24690
Os.11043.2.S1_at--393--773	1	Chr09:14691813..14691837 (25 bp)	GGTGGCAAGCTCGTGTACCAGTACA	LOC_Os09g24690
Os.11043.2.S1_at--184--851	1	Chr09:14691811..14691835 (25 bp)	TGGCAAGCTCGTGTACCAGTACACC	LOC_Os09g24690
Os.11043.2.S1_at--496--279	1	NONE	AAGATCCAGGGAATTCCCCATCTCA	NONE
Os.11043.2.S1_at--163--637	1	NONE	GATCCAGGGAATTCCCCATCTCAGG	NONE
Os.11043.2.S1_at--277--521	1	Chr09:14690685..14690707 (23 bp)	GAATTCCCCATCTCAGGCCTGCTGA	LOC_Os09g24690
Os.11043.2.S1_at--1052--311	1	Chr09:14690176..14690200 (25 bp)	AATTTTACTTACTTGAGCTGGTGTT	LOC_Os09g24690
Os.11043.2.S1_at--26--367	1	Chr09:14690169..14690193 (25 bp)	CTTACTTGAGCTGGTGTTTTGTTTC	LOC_Os09g24690

Target Sequence

GTCAAGACTCCAGGTGGCAAGCTCGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTGACCGGGAA
GAAGATCCAGGGAATTCCCCATCTCAGGCCTGCTGAGTACAAGAGATCCAGGTTGTCTAGGAACCGCAGAACTGTGAACC
GTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATT
GTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTTGGAAGTGGAAGCAAGGC
GATGTGCTATAAACAAGGAAAACATTTTTGTTGATGGTGATGATCAATGGTCTAGCCTCTTCTAGCTGAATGTTTTAGTA
TAACTGTCTGAGTTTGGAGTACTTGAAATCCGTCTACCATTGTGATGCACTTGATGTCAAATGTTGCTGAGACATATTTG
ATCCGCTCTTTTGTTCACTTCTCTGAATTGCGAATGAATTTTACTTACTTGAGCTGGTGTTTTGTTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis