Browse Element(s) Details


Os.11045.2.S1_s_at

Description gb:AK060918.1
DB_XREF= gi:32970936
TID=Os.11045.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11045 (NCBI UniGene Cluster)
UG_TITLE=Thioredoxin h-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G10, full insert sequence.
FL= gb:AK060918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0769011/11Thioredoxin H-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0005489molecular_functionelectron transporter activity
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11045.2.S1_s_at--50--4751Chr05:4114431..4114455 (25 bp)
GCTGATGGCAGCTGAACCTTATTAT
LOC_Os05g07690
Os.11045.2.S1_s_at--46--5071Chr05:4114424..4114448 (25 bp)
GCAGCTGAACCTTATTATAGCGCAA
LOC_Os05g07690
Os.11045.2.S1_s_at--586--8971Chr05:4114419..4114443 (25 bp)
TGAACCTTATTATAGCGCAACGGCT
LOC_Os05g07690
Os.11045.2.S1_s_at--1032--151Chr05:4114411..4114435 (25 bp)
ATTATAGCGCAACGGCTAGAACTGA
LOC_Os05g07690
Os.11045.2.S1_s_at--37--4591Chr05:4114405..4114429 (25 bp)
GCGCAACGGCTAGAACTGAAACGAA
LOC_Os05g07690
Os.11045.2.S1_s_at--602--1911Chr05:4114400..4114424 (25 bp)
ACGGCTAGAACTGAAACGAATTTGG
LOC_Os05g07690
Os.11045.2.S1_s_at--432--7452Chr02:21871419..21871438 (20 bp)
GTGTCTGGCCACACACATATGCAAT
NONE
Os.11045.2.S1_s_at--82--3932Chr02:21871419..21871438 (20 bp)
CTGGCCACACACATATGCAATCTGT
NONE
Os.11045.2.S1_s_at--364--10131Chr05:4114248..4114272 (25 bp)
TATGCAATCTGTGAACTAAGAAGTT
LOC_Os05g07690
Os.11045.2.S1_s_at--1119--5331Chr05:4114229..4114253 (25 bp)
GAAGTTGTGATGTGTTCAGAGCTGT
LOC_Os05g07690
Os.11045.2.S1_s_at--643--2131Chr05:4114169..4114193 (25 bp)
ACAGTGATATGGTTGTATTTTGAGC
LOC_Os05g07690
Target Sequence 
GCTGATGGCAGCTGAACCTTATTATAGCGCAACGGCTAGAACTGAAACGAATTTGGCATGTCTGTCCGGCCAAGTTTGTG
TCCGTGTGCTCCCTTGCAGCTTNTAGTGTATAGTTTTGGTGTCTCTGTTCAAACCATGTTTCTTTTTCTTTNTGAATTTT
GCCCATGTGTCTGGCCACACACATATGCAATCTGTGAACTAAGAAGTTGTGATGTGTTCAGAGCTGTAACATAAGAGTAA
TGTACTAGAGTAGTTTTAAAAGACAGTGATATGGTTGTATTTTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11045.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis