Browse Element(s) Details


Os.11071.1.A1_at

Description gb:AK058236.1
DB_XREF= gi:32968254
TID=Os.11071.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E01, full insert sequence.
FL= gb:AK058236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5221410/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11071.1.A1_at--808--1251Chr01:30347841..30347865 (25 bp)
AGATTCGCCTTAAGCGCGATTTGTG
LOC_Os01g52214
Os.11071.1.A1_at--1033--6511Chr01:30347840..30347864 (25 bp)
GATTCGCCTTAAGCGCGATTTGTGC
LOC_Os01g52214
Os.11071.1.A1_at--524--4451Chr01:30347835..30347859 (25 bp)
GCCTTAAGCGCGATTTGTGCGCTGT
LOC_Os01g52214
Os.11071.1.A1_at--101--3671Chr01:30347833..30347857 (25 bp)
CTTAAGCGCGATTTGTGCGCTGTAT
LOC_Os01g52214
Os.11071.1.A1_at--126--9791Chr01:30347831..30347855 (25 bp)
TAAGCGCGATTTGTGCGCTGTATCT
LOC_Os01g52214
Os.11071.1.A1_at--622--2671Chr01:30347830..30347854 (25 bp)
AAGCGCGATTTGTGCGCTGTATCTT
LOC_Os01g52214
Os.11071.1.A1_at--836--1651Chr01:30347829..30347853 (25 bp)
AGCGCGATTTGTGCGCTGTATCTTT
LOC_Os01g52214
Os.11071.1.A1_at--757--4571Chr01:30347817..30347841 (25 bp)
GCGCTGTATCTTTACCCTTCACTAA
LOC_Os01g52214
Os.11071.1.A1_at--288--10471Chr01:30347806..30347830 (25 bp)
TTACCCTTCACTAAACATTTTATTG
LOC_Os01g52214
Os.11071.1.A1_at--242--1811Chr01:30347804..30347828 (25 bp)
ACCCTTCACTAAACATTTTATTGTG
LOC_Os01g52214
Os.11071.1.A1_at--1143--3651Chr01:30347801..30347825 (25 bp)
CTTCACTAAACATTTTATTGTGTCC
NONE
Target Sequence 
AGATTCGCCTTAAGCGCGATTTGTGCGCTGTATCTTTACCCTTCACTAAACATTTTATTGTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11071.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis