Browse Element(s) Details


Os.11099.2.S1_x_at

Description gb:BI797888
DB_XREF= gi:15849612
DB_XREF=H090C12
CLONE=H090C12
TID=Os.11099.2
CNT=13
FEA=EST
TIER=Stack
STK=8
UG=Os.11099 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for 13 kDa prolamin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1057011/1113 kDa prolamin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11099.2.S1_x_at--383--2491Chr07:5735394..5735418 (25 bp)
AACAGTATAGCATAGTGGCAACCCC
LOC_Os07g10570
Os.11099.2.S1_x_at--821--3231Chr07:5735594..5735618 (25 bp)
CAAGCTCAAGCCCAAACTCTGTTGA
LOC_Os07g10570
Os.11099.2.S1_x_at--934--3731Chr07:5735598..5735622 (25 bp)
CTCAAGCCCAAACTCTGTTGACCTT
LOC_Os07g10570
Os.11099.2.S1_x_at--100--291Chr07:5735661..5735685 (25 bp)
ATAGTGCTCCCAGGAGCATTGCCAC
LOC_Os07g10570
Os.11099.2.S1_x_at--496--10071Chr07:5735662..5735686 (25 bp)
TAGTGCTCCCAGGAGCATTGCCACT
LOC_Os07g10570
Os.11099.2.S1_x_at--281--1131Chr07:5735663..5735687 (25 bp)
AGTGCTCCCAGGAGCATTGCCACTG
LOC_Os07g10570
Os.11099.2.S1_x_at--879--7311Chr07:5735664..5735688 (25 bp)
GTGCTCCCAGGAGCATTGCCACTGT
LOC_Os07g10570
Os.11099.2.S1_x_at--993--9091Chr07:5735665..5735689 (25 bp)
TGCTCCCAGGAGCATTGCCACTGTT
LOC_Os07g10570
Os.11099.2.S1_x_at--942--4791Chr07:5735666..5735690 (25 bp)
GCTCCCAGGAGCATTGCCACTGTTG
LOC_Os07g10570
Os.11099.2.S1_x_at--80--3491Chr07:5735671..5735695 (25 bp)
CAGGAGCATTGCCACTGTTGGTGGT
LOC_Os07g10570
Os.11099.2.S1_x_at--198--1551Chr07:5735675..5735699 (25 bp)
AGCATTGCCACTGTTGGTGGTGTCT
LOC_Os07g10570
Target Sequence 
AACAGTATAGCATAGTGGCAACCCCCTTCTGGCAACCAGCTACGTTTCAATTGATAAACAACCAAGTCATGCAGCAGCAG
TGTTGCCAACAGCTCAGGCTGGTAGCACAACAATCTCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGCAACAGCT
ACAACTGCAGCAATTTAGTGGTGTCTACTTTGATCAGACTCAAGCTCAAGCCCAAACTCTGTTGACCTTCAACTTGCCAT
CCATATGTGGTATCTACCCTAACTACTATAGTGCTCCCAGGAGCATTGCCACTGTTGGTGGTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11099.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis