Browse Element(s) Details


Os.11140.1.S1_at

Description gb:AK120638.1
DB_XREF= gi:37990261
TID=Os.11140.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153K17, full insert sequence.
FL= gb:AK120638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4917011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49126OsAffx.3690.1.S1_at11/113+27933023..27935849expressed protein
LOC_Os03g49132OsAffx.25636.1.S1_at11/113+27936611..27938041hypothetical protein
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11140.1.S1_at--526--6611Chr03:27960888..27960912 (25 bp)
GATTGGTTTTCTTTACTTTATTGAG
LOC_Os03g49170
Os.11140.1.S1_at--317--6831Chr03:27960976..27961000 (25 bp)
GTTTCAAGACCGACCCAGGTAGAAT
LOC_Os03g49170
Os.11140.1.S1_at--852--1011Chr03:27960992..27961016 (25 bp)
AGGTAGAATCGCACCCCGGCAGCTT
LOC_Os03g49170
Os.11140.1.S1_at--6--8271Chr03:27961009..27961033 (25 bp)
GGCAGCTTCAATTCATCGGTCAAAA
LOC_Os03g49170
Os.11140.1.S1_at--1022--4251Chr03:27961074..27961098 (25 bp)
GACTCGTTTGGTGTTTCGGAATTCT
LOC_Os03g49170
Os.11140.1.S1_at--75--7931Chr03:27961167..27961191 (25 bp)
GGTTGGTTACCAGGCATGCTATAGT
LOC_Os03g49170
Os.11140.1.S1_at--985--7491Chr03:27961190..27961214 (25 bp)
GTGGTATATCAAGTCCCAAAGTATT
LOC_Os03g49170
Os.11140.1.S1_at--874--3671Chr03:27961225..27961249 (25 bp)
CTTTCACCATTTGTCGAGGATCATA
LOC_Os03g49170
Os.11140.1.S1_at--171--6172Chr06:24787233..24787261 (23 bp)
GAGGATCATACTATGGCCTTGTTTT
NONE
Os.11140.1.S1_at--865--7131Chr03:27961316..27961340 (25 bp)
GTCATTGAACTTACATTGCTATTGT
LOC_Os03g49170
Os.11140.1.S1_at--428--10751Chr03:27961342..27961366 (25 bp)
TTGCAATCGCAAATCTCGCTCATCA
LOC_Os03g49170
Target Sequence 
GATTGGTTTTCTTTACTTTATTGAGGTAAATCATATACATTATTGAGGTTCCAGTAGGTTGAAAGATTGAAGTACCTTGA
TTGGGGTCGTTTCAAGACCGACCCAGGTAGAATCGCACCCCGGCAGCTTCAATTCATCGGTCAAAAATATTTCCCTGTTT
TGTTAATTAACCCCGTTAAAAAAGAAGACTCGTTTGGTGTTTCGGAATTCTTTTCTTTACCTTAGCGGTGTTTATTTTGT
TTATTATGATATTGATACTTGATGTACTGATGGGTATAAGGTTGGTTACCAGGCATGCTATAGTGGTATATCAAGTCCCA
AAGTATTCTTTTTCTCCCTTTCACCATTTGTCGAGGATCATACTATGGCCTTGTTTTGGTCAGATCTTGAGGCCTNTATA
ATCCTTGGATTTGTAATAATGTAATATTGTCATTGAACTTACATTGCTATTGTTTTGCAATCGCAAATCTCGCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis