Browse Element(s) Details


Os.11210.1.S1_at

Description gb:AK060401.1
DB_XREF= gi:32970419
TID=Os.11210.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-B11, full insert sequence.
FL= gb:AK060401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3761010/11ribosomal protein S6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11210.1.S1_at--625--1411Chr12:23063983..23064007 (25 bp)
AGACATGCCAACTACATCTTAATGA
LOC_Os12g37610
Os.11210.1.S1_at--417--3011Chr12:23063932..23063956 (25 bp)
AATGACTTCAAGACCCTGCTAGATA
LOC_Os12g37610
Os.11210.1.S1_at--508--1471Chr12:23063899..23063923 (25 bp)
AGAATCATTAGGCATCTCGTGATGA
LOC_Os12g37610
Os.11210.1.S1_at--202--5551Chr12:23063876..23063900 (25 bp)
GAAACGGGACGAGGCGATCACTGAA
LOC_Os12g37610
Os.11210.1.S1_at--116--911Chr12:23063865..23063889 (25 bp)
AGGCGATCACTGAAGACTGCTCTCC
LOC_Os12g37610
Os.11210.1.S1_at--10--9151Chr12:23063820..23063844 (25 bp)
TGCGAGCTCAACAACAGTATATGGA
LOC_Os12g37610
Os.11210.1.S1_at--706--7851Chr12:23063580..23063604 (25 bp)
GGTAGCTTAGATGTCTCTGTTTTCA
LOC_Os12g37610
Os.11210.1.S1_at--471--10351Chr12:23063528..23063552 (25 bp)
TTTTTCTATACAAAGGACCCACCTG
LOC_Os12g37610
Os.11210.1.S1_at--77--971Chr12:23063515..23063539 (25 bp)
AGGACCCACCTGTATGAAAATATGA
LOC_Os12g37610
Os.11210.1.S1_at--919--451Chr12:23063480..23063504 (25 bp)
ATCTCAGCTGAGTGCATTCCATGTA
LOC_Os12g37610
Os.11210.1.S1_at--1058--9591Chr12:23063427..23063451 (25 bp)
TCATTAGGTGTTCCCTTGTACCTGA
NONE
Target Sequence 
AGACATGCCAACTACATCTTAATGAACTTTGAGATACAGGCAAAATACATCAATGACTTCAAGACCCTGCTAGATAAGGA
CGAGAGAATCATTAGGCATCTCGTGATGAAACGGGACGAGGCGATCACTGAAGACTGCTCTCCCCCACCAGAGTTCCACA
CCNTGCGAGCTCAACAACAGTATATGGATGATGAATACATTGATGATGAAGATGATGGCAAAGAGGAGCAGGAGCCGGAG
GAGGATTGGGATGACAAGGGTGAAATGGAGAACGCTGGTTATGAAGATGATGATGAACCTGAAATTATTCTTGTTGATGA
AGTCGAGCGCGATAACAACGANAACATTAGAAGAAGGAACAGGACAATGAAAGTAGAGAAGTACGCAGCTGAGAAAGTCT
TGAGGTAGCTTAGATGTCTCTGTTTTCATTTAGTCTTAGTGTAAGACTACCCCTTTTTTTCTATACAAAGGACCCACCTG
TATGAAAATATGACTACNAAGTAATCTCAGCTGAGTGCATTCCATGTATCAAATGACCACTGTTTTGATGATAAGTTCAT
TAGGTGTTCCCTTGTACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis