Browse Element(s) Details


Os.11248.1.S1_at

Description gb:AK066890.1
DB_XREF= gi:32976908
TID=Os.11248.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.11248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088L20, full insert sequence.
FL= gb:AK066890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0444011/112-isopropylmalate synthase B, putative, expressed
LOC_Os11g0467010/112-isopropylmalate synthase B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04390OsAffx.31576.1.S1_at11/1112+1863322..1864544hypothetical protein
LOC_Os12g04400NANA12+1866002..1866811hypothetical protein
LOC_Os12g04410Os.49532.1.S1_s_at4/1112+1868475..1871099ankyrin repeat family protein, putative, expressed
LOC_Os12g04424Os.5263.2.S1_x_at11/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_x_at6/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_at5/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04440Os.11248.1.S1_at11/1112+1887941..18938702-isopropylmalate synthase B, putative, expressed
LOC_Os12g04450OsAffx.19490.2.S1_at11/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04450OsAffx.19490.1.S1_at2/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04460OsAffx.18669.1.S1_at11/1112+1898902..1899588Zinc finger, C3HC4 type family protein
LOC_Os12g04470OsAffx.31577.1.S1_s_at11/1112+1900516..1901956hypothetical protein
LOC_Os12g04480Os.23206.1.S1_at10/1112+1905049..1908150Cytochrome P450 family protein, expressed
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009098biological_processleucine biosynthesis
GO:0019761biological_processglucosinolate biosynthesis
GO:0009507cellular_componentchloroplast
GO:0003852molecular_function2-isopropylmalate synthase activity
GO:0046912molecular_functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11248.1.S1_at--206--9232Chr12:1892765..1892789 (25 bp)
TCCAGTTGATGCAGCTTACAAGGCT
LOC_Os12g04440
Os.11248.1.S1_at--98--5672Chr12:1893197..1893221 (25 bp)
GACATCGGTCACAGAAGGCATTGAT
LOC_Os12g04440
Os.11248.1.S1_at--1136--4572Chr12:1893262..1893286 (25 bp)
GCGACTCTAAACATGCTTTGACTGG
LOC_Os12g04440
Os.11248.1.S1_at--177--2513Chr12:24637197..24637221 (25 bp)
AACATGCTTTGACTGGTCACTCCTT
NONE
Os.11248.1.S1_at--635--7293Chr12:24637371..24637395 (25 bp)
GTGCCGCACTGGATATTGTTGTTTC
NONE
Os.11248.1.S1_at--209--10793Chr12:24637386..24637410 (25 bp)
TTGTTGTTTCCAGTGTGCGAGCTTA
NONE
Os.11248.1.S1_at--548--9153Chr12:24637401..24637425 (25 bp)
TGCGAGCTTACCTGAGTGCCCTGAA
NONE
Os.11248.1.S1_at--822--7294Chr12:1893493..1893517 (25 bp)
GTGCCCTGAACAAGATGTCCAGTTT
LOC_Os12g04440
Os.11248.1.S1_at--610--6732Chr12:1893614..1893638 (25 bp)
GTTCTATGTTTCACATTCCCAGCAA
LOC_Os12g04440
Os.11248.1.S1_at--120--9472Chr12:1893681..1893705 (25 bp)
TCTGGAGGATGTTCTGGGTTTCTTT
LOC_Os12g04440
Os.11248.1.S1_at--1054--6811Chr12:1893698..1893722 (25 bp)
GTTTCTTTGGTGGAGCCTGACTTAA
LOC_Os12g04440
Target Sequence 
TCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATACAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGG
TCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTNAGCGACTCTAAACATGCTTTGACT
GGTCACTCCTTCANCCGGGCATTCAGTGGGAGTGGTGCCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAG
TGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCA
CAGAATGAGTCTTGACNCTCCTTNNNNGGTTTTCATATCNGATGGTTCTATGTTTCACATTCCCAGCAAGGAGTATGTGC
TTGTTGAAACATNGNTTTTNNNNNNNNNNNNNNNNNNNNTCCGTTTAGTGCATCTGGAGGATGTTCTGGGTTTCTTTGGT
GGAGCCTGACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis