Browse Element(s) Details


Os.11258.1.S2_at

Description gb:CB629921
DB_XREF= gi:29624910
DB_XREF=OSIIEb06I12.r
CLONE=OSIIEb06I12
TID=Os.11258.1
CNT=10
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.11258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent RNA helicase (OJ1316_A04.19), mRNA
FL= gb:AK063527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4536010/11Type III restriction enzyme, res subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11258.1.S2_at--537--1251Chr07:27057354..27057378 (25 bp)
AGATTCATCGCATATCCCAACATAC
LOC_Os07g45360
Os.11258.1.S2_at--527--3311Chr07:27057386..27057410 (25 bp)
CACAGGCATTTACCATTTTCAGTCT
LOC_Os07g45360
Os.11258.1.S2_at--35--7191Chr07:27057407..27057431 (25 bp)
GTCTGTCCTGTGGTCATTTGTTAAC
LOC_Os07g45360
Os.11258.1.S2_at--89--6771Chr07:27057426..27057450 (25 bp)
GTTAACTGTCTTGCAGAGCCTGCAT
LOC_Os07g45360
Os.11258.1.S2_at--448--8691Chr07:27057690..27057714 (25 bp)
TGTGCTCTTTCAGAATCTCCACTAG
LOC_Os07g45360
Os.11258.1.S2_at--193--2031NONE
ACTAGCCTCCTTGCAATGTCTGTAT
NONE
Os.11258.1.S2_at--324--771Chr07:27057725..27057749 (25 bp)
ATGTCTGTATCTGGTACACCTGCCT
LOC_Os07g45360
Os.11258.1.S2_at--322--1751Chr07:27057742..27057766 (25 bp)
ACCTGCCTTTCCAAAGATTTCCTTG
LOC_Os07g45360
Os.11258.1.S2_at--245--3251Chr07:27057783..27057807 (25 bp)
CAAGCCTTGTAATCTGTATTGCCAA
LOC_Os07g45360
Os.11258.1.S2_at--818--6871Chr07:27057798..27057822 (25 bp)
GTATTGCCAATCCTATAGACACCTC
LOC_Os07g45360
Os.11258.1.S2_at--498--2691Chr07:27057827..27057851 (25 bp)
AAGCTGCTCTTCTCAACCATAATTG
LOC_Os07g45360
Target Sequence 
AGATTCATCGCATATCCCAACATACAACCAATCACAGGCATTTACCATTTTCAGTCTGTCCTGTGGTCATTTGTTAACTG
TCTTGCAGAGCCTGCATGATCTCCATGGCATCATCTACAAGTGAGGCCAGAGTTGAGCTGTGCCTGCTCAGCCCAATGCT
GCCAGAGAACATGTTGAAGCTCTCGAGCTCGGACGTCGACCTGACGACGCTCCTGAGCTCCTTCTCCAGCTCCATGCTCC
TGAAGAAGGGGACGAGCTCGGCGTCGCCTCTCATCATGGCGATGGCGAGCTCGATGACGAACCTTCTCATCCTCGGAACC
TTCACCCTGGGTGTCCTGTGCTCTTTCAGAATCTCCACTAGCCTCCTTGCAATGTCTGTATCTGGTACACCTGCCTTTCC
AAAGATTTCCTTGTGAAATTCAGGTGTTGCAAGCCTTGTAATCTGTATTGCCAATCCTATAGACACCTCAAGCAAGCTGC
TCTTCTCAACCATAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11258.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis