Browse Element(s) Details


Os.11293.1.S1_at

Description gb:AK120564.1
DB_XREF= gi:37990187
TID=Os.11293.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132N21, full insert sequence.
FL= gb:AK120564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5878010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0009908biological_processflower development
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0016481biological_processnegative regulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11293.1.S1_at--240--3631Chr03:33413323..33413347 (25 bp)
CTTGAGATTCCTTCATCTGCCTGTC
LOC_Os03g58780
Os.11293.1.S1_at--429--6051Chr03:33413320..33413344 (25 bp)
GAGATTCCTTCATCTGCCTGTCCTG
LOC_Os03g58780
Os.11293.1.S1_at--319--9611Chr03:33413311..33413335 (25 bp)
TCATCTGCCTGTCCTGCTAGTTCGA
LOC_Os03g58780
Os.11293.1.S1_at--515--471Chr03:33413309..33413333 (25 bp)
ATCTGCCTGTCCTGCTAGTTCGATT
LOC_Os03g58780
Os.11293.1.S1_at--252--3831Chr03:33413307..33413331 (25 bp)
CTGCCTGTCCTGCTAGTTCGATTAT
LOC_Os03g58780
Os.11293.1.S1_at--1159--4471Chr03:33413305..33413329 (25 bp)
GCCTGTCCTGCTAGTTCGATTATCT
LOC_Os03g58780
Os.11293.1.S1_at--450--3891Chr03:33413303..33413327 (25 bp)
CTGTCCTGCTAGTTCGATTATCTTC
LOC_Os03g58780
Os.11293.1.S1_at--547--8711Chr03:33413302..33413326 (25 bp)
TGTCCTGCTAGTTCGATTATCTTCA
LOC_Os03g58780
Os.11293.1.S1_at--142--3831Chr03:33413298..33413322 (25 bp)
CTGCTAGTTCGATTATCTTCAAGAA
LOC_Os03g58780
Os.11293.1.S1_at--1015--431Chr03:33413284..33413308 (25 bp)
ATCTTCAAGAAAATCTGAGCTCCTT
LOC_Os03g58780
Os.11293.1.S1_at--937--5511Chr03:33413277..33413300 (24 bp)
GAAAATCTGAGCTCCTTGTTTCTGG
NONE
Target Sequence 
CTTGAGATTCCTTCATCTGCCTGTCCTGCTAGTTCGATTATCTTCAAGAAAATCTGAGCTCCTTGTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis