Browse Element(s) Details


Os.11322.1.S1_at

Description gb:AK101480.1
DB_XREF= gi:32986689
TID=Os.11322.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) nitrate transporter NRT1;2 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041C01, full insert sequence.
FL= gb:AY305030.1 gb:AK101480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5095011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11322.1.S1_at--198--4631Chr04:29946143..29946167 (25 bp)
GCGTTCGCCCGGACCTACAGGGTGA
LOC_Os04g50950
Os.11322.1.S1_at--459--1751Chr04:29946155..29946179 (25 bp)
ACCTACAGGGTGAAGCTGGTCGTGT
LOC_Os04g50950
Os.11322.1.S1_at--619--5411Chr04:29946166..29946190 (25 bp)
GAAGCTGGTCGTGTCGTGATTGTTC
LOC_Os04g50950
Os.11322.1.S1_at--632--7191Chr04:29946178..29946202 (25 bp)
GTCGTGATTGTTCGTTACTCCCTTA
LOC_Os04g50950
Os.11322.1.S1_at--360--6771Chr04:29946191..29946215 (25 bp)
GTTACTCCCTTACCATGATCAGGTT
LOC_Os04g50950
Os.11322.1.S1_at--1068--9971Chr04:29946201..29946225 (25 bp)
TACCATGATCAGGTTACACGCAATC
LOC_Os04g50950
Os.11322.1.S1_at--443--7891Chr04:29946212..29946236 (25 bp)
GGTTACACGCAATCGTGGTCGTATT
LOC_Os04g50950
Os.11322.1.S1_at--762--5191Chr04:29946220..29946244 (25 bp)
GCAATCGTGGTCGTATTGTGTTACA
LOC_Os04g50950
Os.11322.1.S1_at--648--5651Chr04:29946283..29946307 (25 bp)
GACAGTATGTGTAAAGTTCAAGGAA
LOC_Os04g50950
Os.11322.1.S1_at--394--2411Chr04:29946311..29946335 (25 bp)
AAACAAGGTTTGATGGGCTGACAGC
LOC_Os04g50950
Os.11322.1.S1_at--883--8951Chr04:29946329..29946353 (25 bp)
TGACAGCCCAGCAGCTTCCTTTATG
LOC_Os04g50950
Target Sequence 
GCGTTCGCCCGGACCTACAGGGTGAAGCTGGTCGTGTCGTGATTGTTCGTTACTCCCTTACCATGATCAGGTTACACGCA
ATCGTGGTCGTATTGTGTTACAGNAAGAATCTTGTACTCCTAGCTAGCNATAGCGACANCCGACAGTATGTGTAAAGTTC
AAGGAANAAAAACAAGGTTTGATGGGCTGACAGCCCAGCAGCTTCCTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis