Browse Element(s) Details


Os.11338.1.S1_at

Description gb:AK066408.1
DB_XREF= gi:32976426
TID=Os.11338.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066P10, full insert sequence.
FL= gb:AK066408.1 gb:AK061819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6905011/11lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69030Os.3454.1.S1_at10/111+40428272..40433444Sucrose-phosphate synthase, putative, expressed
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11338.1.S1_at--876--7291Chr01:40458678..40458702 (25 bp)
GTGCGCGTGGCACATGATCCAGAAC
LOC_Os01g69050
Os.11338.1.S1_at--62--8251Chr01:40458686..40458710 (25 bp)
GGCACATGATCCAGAACGACCTCAT
LOC_Os01g69050
Os.11338.1.S1_at--749--3391Chr01:40458697..40458721 (25 bp)
CAGAACGACCTCATCTACGCGTGGG
LOC_Os01g69050
Os.11338.1.S1_at--1032--10491Chr01:40458730..40458754 (25 bp)
TTCAAGCTCGGGTACTGCGCCGGCG
LOC_Os01g69050
Os.11338.1.S1_at--286--9331Chr01:40458890..40458914 (25 bp)
TCGCCGTGAGGCAGCGGTCGTACAC
LOC_Os01g69050
Os.11338.1.S1_at--512--9851Chr01:40458910..40458934 (25 bp)
TACACCGAGCTGCAGATATTCAACC
LOC_Os01g69050
Os.11338.1.S1_at--770--7631Chr01:40458959..40458983 (25 bp)
GGGACGTGTGCTGGACCGACCCCTA
LOC_Os01g69050
Os.11338.1.S1_at--1011--3971Chr01:40459039..40459063 (25 bp)
CGGGCGTACGGCTAGTTACTTGAGT
LOC_Os01g69050
Os.11338.1.S1_at--728--3651Chr01:40459088..40459112 (25 bp)
CTTCTCTTCTTGATGTACAGATTTG
LOC_Os01g69050
Os.11338.1.S1_at--1065--3431Chr01:40459105..40459129 (25 bp)
CAGATTTGTTTCTCTCATCGTCAGA
LOC_Os01g69050
Os.11338.1.S1_at--731--6831Chr01:40459112..40459136 (25 bp)
GTTTCTCTCATCGTCAGAATAAGCA
LOC_Os01g69050
Target Sequence 
GTGCGCGTGGCACATGATCCAGAACGACCTCATCTACGCGTGGGGCCTCGACTTCAAGCTCGGGTACTGCGCCGGCGGCG
ACCGGAGGCTCGCCGTCGGCATCGTCGACAGCGAGTACGTCCTCCACCGCGGCATCCCCACGCTCGGCGACGGCGGCGGC
AAGCCGGCGGCGAAGCGGTCGTCGACGGCGACGAAGGCGGCGACCGACCGGCTCGCCGTGAGGCAGCGGTCGTACACCGA
GCTGCAGATATTCAACCGGCGGTGGAAGGCCGCGGCGGAGGGGGACGTGTGCTGGACCGACCCCTACCCGTAGCCCGCCG
GCGACGGCGACCGAGCTCGTCGCCGGCGATGGCGGTGGGACCGGGCGTACGGCTAGTTACTTGAGTAGCTGAGATATGAT
AGATACAGAGCTTCTCTTCTTGATGTACAGATTTGTTTCTCTCATCGTCAGAATAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis