Browse Element(s) Details


Os.11353.1.S1_at

Description gb:AY187620.1
DB_XREF= gi:27948555
GEN=IAR
TID=Os.11353.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11353 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) IAA-amino acid hydrolase (IAR) mRNA, complete cds.
PROD=IAA-amino acid hydrolase
FL= gb:AY187620.1 gb:AK059399.1 gb:AK105974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3796011/11IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os07g261501/11RADIALIS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37920Os.46040.1.A1_at3/111+21568475..21569735expressed protein
LOC_Os01g37920OsAffx.11368.1.S1_at1/111+21568475..21569735expressed protein
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11353.1.S1_at--284--6351Chr01:21594419..21594438 (20 bp)
GATCCCCTAGACTCACAGGTAGTAA
LOC_Os01g37960
Os.11353.1.S1_at--390--8031Chr01:21593722..21593746 (25 bp)
GGAGGTGGAGCCTTCAATGTCATCC
LOC_Os01g37960
Os.11353.1.S1_at--79--7131Chr01:21593704..21593728 (25 bp)
GTCATCCCTGATTCTGTTACAATTG
LOC_Os01g37960
Os.11353.1.S1_at--824--31Chr01:21593249..21593273 (25 bp)
ATTGTGTCACAAGCATCCGTGCAGC
LOC_Os01g37960
Os.11353.1.S1_at--427--6951Chr01:21593132..21593156 (25 bp)
GTAGCTAGCGAGATGGTTGGCCCCA
LOC_Os01g37960
Os.11353.1.S1_at--610--1691Chr01:21593089..21593113 (25 bp)
AGCCACTGATGGGTGCCGAGGACTT
LOC_Os01g37960
Os.11353.1.S1_at--887--1831Chr01:21593056..21593080 (25 bp)
ACGCTGATGCGATTCCTGCAACTTA
LOC_Os01g37960
Os.11353.1.S1_at--221--10472Chr07:15034093..15034138 (24 bp)
TTACTACTACTTCCTGGGCATGTAC
LOC_Os07g26150
Os.11353.1.S1_at--290--9931Chr01:21592940..21592964 (25 bp)
TACGGTGCAGCCTTGCAAGCATCAC
LOC_Os01g37960
Os.11353.1.S1_at--299--2031Chr01:21592917..21592941 (25 bp)
ACTAGCTGCTCGCTATCTGCTTGAG
LOC_Os01g37960
Os.11353.1.S1_at--642--8651Chr01:21592849..21592873 (25 bp)
TGTAGGTACGGACACTTTCGCTCTC
LOC_Os01g37960
Target Sequence 
GATCCCCTAGACTCACAGGTAGTAACAGTAGGAAAATTTCAAGGAGGTGGAGCCTTCAATGTCATCCCTGATTCTGTTAC
AATTGGTGGCACCTTCCGAGCCTTTTTAAAAGAGAGTTTTAATCAATTGAAGCAGCGAATTGAAGAGGTCATTGTGTCAC
AAGCATCCGTGCAGCGGTGCAATGCNTGTCGTAGACTTCCTCGACAAAGACCGCCCTTTCTTCCCTCCAACAATCAACAG
CGCGGGGNCTCCACGATTTCTTTGTGAAGGTAGCTAGCGAGATGGTTGGCCCCAAGAATGTCAGGGACAAGCAGCCACTG
ATGGGTGCCGAGGACTTCGCCTTCTACGCTGATGCGATTCCTGCAACTTACTACTACTTCCTGGGCATGTACAACGAGAC
TCGCGGACCGCAGGCGCCTCACCACTCCCCCTACTTCACCATCAACGAAGACGCCCTGCCCTACGGTGCAGCCTTGCAAG
CATCACTAGCTGCTCGCTATCTGCTTGAGCACCAGCCCCCTACCACTGGTAAGGCGAAAGCACATGACGAGCTGTAGGTA
CGGACACTTTCGCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis