Browse Element(s) Details


Os.11454.1.S1_x_at

Description gb:AK101194.1
DB_XREF= gi:32986403
TID=Os.11454.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative multidrug resistance protein (OJ1029_F04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030J11, full insert sequence.
FL= gb:AK101194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3497011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34950OsAffx.9043.1.S1_at11/111+19665790..19666983hypothetical protein
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11454.1.S1_x_at--942--10431Chr01:19683553..19683577 (25 bp)
TTATGAGCCACCATCAGAACTCCTG
LOC_Os01g34970
Os.11454.1.S1_x_at--1126--951Chr01:19683579..19683603 (25 bp)
AGGACTCCAGGTTCTGGGCAAGCAT
LOC_Os01g34970
Os.11454.1.S1_x_at--79--5931Chr01:19683618..19683642 (25 bp)
GAGCTTCTGCATTTGTTCTGATTCC
LOC_Os01g34970
Os.11454.1.S1_x_at--503--71Chr01:19683638..19683662 (25 bp)
ATTCCAACCGAGTACTTCCTGTTTG
LOC_Os01g34970
Os.11454.1.S1_x_at--442--8091Chr01:19683685..19683709 (25 bp)
GGAGCGTATACGTTCACTGACATTC
LOC_Os01g34970
Os.11454.1.S1_x_at--775--2071Chr01:19683704..19683728 (25 bp)
ACATTCCGAAGTGTCATGCACCAGG
LOC_Os01g34970
Os.11454.1.S1_x_at--774--10251Chr01:19683740..19683762 (23 bp)
TTTGACAAACCTGAACACTCTAGTG
LOC_Os01g34970
Os.11454.1.S1_x_at--345--2951Chr01:19684499..19684523 (25 bp)
AAGGCTGTCTGTTGATGCTCTGAAT
LOC_Os01g34970
Os.11454.1.S1_x_at--1018--771Chr01:19684522..19684546 (25 bp)
ATGTGAAGCGCCTTGTTGGAGACAA
LOC_Os01g34970
Os.11454.1.S1_x_at--991--6611Chr01:19684653..19684677 (25 bp)
GTTGGTTTCCAAGCCTATGCTCAAA
LOC_Os01g34970
Os.11454.1.S1_x_at--975--7531Chr01:19684865..19684889 (25 bp)
GTGGCATCATTTTGTGCTGAGCAGA
LOC_Os01g34970
Target Sequence 
TTATGAGCCACCATCAGAACTCCTGAAGGACTCCAGGTTCTGGGCAAGCATGTTTGTTGTGGTGGGAGCTTCTGCATTTG
TTCTGATTCCAACCGAGTACTTCCTGTTTGGATTAGCAGGTGGAAAGCTTGTGGAGCGTATACGTTCACTGACATTCCGA
AGTGTCATGCACCAGGAAATCAACTGGTTTGACAAACCTGAACACTCTAGTGGATCGATTGGTGCAAGGCTGTCTGTTGA
TGCTCTGAATGTGAAGCGCCTTGTTGGAGACAATTTGGCACTTAATGTCCAGACTGTATCAACTGTCATATCAGGTTTTA
CAATAGCAATGGTGGCAAACTGGAAGCTGGCATTGATTATAACAGTGGTAGTTCCTTTGGTTGGTTTCCAAGCCTATGCT
CAAATGAAGTTTTTGAAAGGTTTCAACAAAAACGCAAAGCTGAAGTATGAAGAAGCAAGTCAAGTAGCAACTGATGCAGT
TGGAGGCATCAGAACTGTGGCATCATTTTGTGCTGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis