Browse Element(s) Details


Os.11454.2.S1_at

Description gb:AK106698.1
DB_XREF= gi:32991907
TID=Os.11454.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative multidrug resistance protein (OJ1029_F04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D11, full insert sequence.
FL= gb:AK106698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3497011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34950OsAffx.9043.1.S1_at11/111+19665790..19666983hypothetical protein
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11454.2.S1_at--531--3931Chr01:19685819..19685843 (25 bp)
CGGCGAGAGAGGGATCCAACTGTCA
LOC_Os01g34970
Os.11454.2.S1_at--38--6371Chr01:19685831..19685855 (25 bp)
GATCCAACTGTCAGGCGGGCAGAAG
LOC_Os01g34970
Os.11454.2.S1_at--857--8431Chr01:19685876..19685900 (25 bp)
GGCCATCATGAAGGACCCCAAGGTG
LOC_Os01g34970
Os.11454.2.S1_at--817--8391Chr01:19686002..19686026 (25 bp)
GGCGCATCGGCTGTCGACGATAAAA
LOC_Os01g34970
Os.11454.2.S1_at--429--9331Chr01:19686120..19686144 (25 bp)
TCGCTTGTCGAGCTTAGTTCAAGTT
LOC_Os01g34970
Os.11454.2.S1_at--898--7831Chr01:19686148..19686172 (25 bp)
GGTAAATCTTCTGAAAGCCTGAACA
LOC_Os01g34970
Os.11454.2.S1_at--105--2671Chr01:19686162..19686186 (25 bp)
AAGCCTGAACATTATCACCTCTAAT
LOC_Os01g34970
Os.11454.2.S1_at--682--5511Chr01:19686192..19686216 (25 bp)
GAAAATACTGACTTCTCCTGAATAG
LOC_Os01g34970
Os.11454.2.S1_at--937--1331Chr01:19686215..19686239 (25 bp)
AGAGTTTGTCCGCTGGTACTGAAAA
LOC_Os01g34970
Os.11454.2.S1_at--666--6311Chr01:19686301..19686325 (25 bp)
GATGACATGCACTGTTTTTCTCTAA
LOC_Os01g34970
Os.11454.2.S1_at--1042--231Chr01:19686348..19686372 (25 bp)
ATATACCGGCAATTCAGCATATGTG
LOC_Os01g34970
Target Sequence 
CGGCGAGAGAGGGATCCAACTGTCAGGCGGGCAGAAGCAGCGCGTCGCCATCGCGAGGGCCATCATGAAGGACCCCAAGG
TGCTCCTGCTCGACGAGGCGACGAGCGCGCTGGACGCAGAGTCGGAGCGCGTGGTGCAGGAGGCGCTGGACCGGGTGATG
GTGGGGAGGACGACCGTGGTGGTGGCGCATCGGCTGTCGACGATAAAAGGCGCGGACATCATCGGCGTCCTCAAGAACGG
GGCGATAGTGGAAAAAGGGGGGCATGATGAACTGATGCGGATAAAGGATGGAACCTANNCNTCGCTTGTCGAGCTTAGTT
CAAGTTCAAGGTAAATCTTCTGAAAGCCTGAACATTATCACCTCTAATAGTATGAAAATACTGACTTCTCCTGAATAGAG
TTTGTCCGCTGGTACTGAAAATGGTCATATATATGTAAGTTTATAGTAGGAAAAGCAAAGCTATGCATTCTATATTTAGT
TGGATGACATGCACTGTTTTTCTCTAACTAATTAAATTNCGTTGTATATATATACCGGCAATTCAGCATATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11454.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis