Browse Element(s) Details


Os.11464.1.S1_at

Description gb:AK065587.1
DB_XREF= gi:32975605
TID=Os.11464.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030E14, full insert sequence.
FL= gb:AK065587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4151011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed
LOC_Os03g41540OsAffx.10665.1.S1_x_at9/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55476.1.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55138.1.S1_x_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540OsAffx.10665.2.S1_at1/113+23055080..23056298hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
GO:0005267molecular_functionpotassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11464.1.S1_at--307--1371Chr03:23044198..23044222 (25 bp)
AGAGCAGGCTAAATCTCTTCCCTGG
LOC_Os03g41510
Os.11464.1.S1_at--1004--9571Chr03:23044213..23044237 (25 bp)
TCTTCCCTGGATACATGGAGCGCTA
LOC_Os03g41510
Os.11464.1.S1_at--25--5891Chr03:23044230..23044254 (25 bp)
GAGCGCTACAATGCATCGTTGGCTA
LOC_Os03g41510
Os.11464.1.S1_at--389--2711Chr03:23044438..23044462 (25 bp)
AAGCTTGCCAAGAAGCACGGCCTAA
LOC_Os03g41510
Os.11464.1.S1_at--385--7271Chr03:23044499..23044523 (25 bp)
GTCCATTCACAGCTAGCACAATCAT
LOC_Os03g41510
Os.11464.1.S1_at--306--10771Chr03:23044559..23044583 (25 bp)
TTGATGCATTTACCAGTGCTCCACG
LOC_Os03g41510
Os.11464.1.S1_at--88--5991Chr03:23044637..23044661 (25 bp)
GAGACCCAACACTTTCGTAGGTGAG
LOC_Os03g41510
Os.11464.1.S1_at--163--1831Chr03:23044677..23044701 (25 bp)
ACGCTTTCGTAGGTGTTTATTCATC
LOC_Os03g41510
Os.11464.1.S1_at--513--10391Chr03:23044705..23044729 (25 bp)
TTTTCCTATGAATGTGCCTTCCACA
LOC_Os03g41510
Os.11464.1.S1_at--64--7331Chr03:23044752..23044776 (25 bp)
GTGCTTTTGTGGTTTCACCGTATCA
LOC_Os03g41510
Os.11464.1.S1_at--48--6891Chr03:23044854..23044878 (25 bp)
GTATTTTGCTGCTCTGGAGACGTTT
LOC_Os03g41510
Target Sequence 
AGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTC
AAGCTTGCCAAGAAGCACGGCCTAACTCCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCAC
AATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGG
AAGTTCTTGATGACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGAAAAANAGA
ACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCT
TTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACA
AATTTTTTTNCCNNCAGTATTTTGCTGCTCTGGAGACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis