Browse Element(s) Details

Os.11468.1.S1_at

Description

gb:CA760620
DB_XREF= gi:25804659
DB_XREF=BR060006B10D12.ab1
CLONE=BR060006B10D12.ab1
TID=Os.11468.1
CNT=30
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11468 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T51804 (A.thaliana) T51804 respiratory burst oxidase protein D (imported) - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g33120	10/11	respiratory burst oxidase protein D, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g33080	OsAffx.22940.5.S1_at	11/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.22940.2.S1_s_at	11/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	Os.35344.3.S1_x_at	11/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.22940.5.S1_x_at	10/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.22940.1.S1_s_at	10/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.22940.3.S1_x_at	9/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	Os.35344.18.S1_x_at	9/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.22940.2.S1_at	9/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33080	OsAffx.31552.2.S1_at	1/11	11	+	19062593..19070142	transposon protein, putative, Mutator sub-class
LOC_Os11g33090	Os.23152.1.S1_at	11/11	11	+	19070910..19074968	amidase family protein, putative, expressed
LOC_Os11g33100	OsAffx.19137.1.S1_s_at	11/11	11	+	19078857..19084038	expressed protein
LOC_Os11g33110	OsAffx.19138.1.S1_at	11/11	11	+	19084161..19084993	Germin-like protein subfamily 3 member 4 precursor, putative, expressed
LOC_Os11g33120	Os.51584.1.S1_at	11/11	11	+	19087453..19094956	respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33120	Os.11468.1.S1_at	10/11	11	+	19087453..19094956	respiratory burst oxidase protein D, putative, expressed
LOC_Os11g33134	Os.54924.1.S1_at	10/11	11	+	19113504..19114166	expressed protein
LOC_Os11g33150	Os.46808.2.S1_x_at	4/11	11	+	19116876..19117982	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006800	biological_process	oxygen and reactive oxygen species metabolism
GO:0006952	biological_process	defense response
GO:0009060	biological_process	aerobic respiration
GO:0009408	biological_process	response to heat
GO:0010053	biological_process	root epidermal cell differentiation
GO:0043069	biological_process	negative regulation of programmed cell death
GO:0016174	molecular_function	NAD(P)H oxidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11468.1.S1_at--638--687	1	Chr11:19088047..19088071 (25 bp)	GTATTGCTTGATTGTGGCCAGGCTT	LOC_Os11g33120
Os.11468.1.S1_at--533--961	1	Chr11:19088010..19088034 (25 bp)	TCATCGGTTTTTTGCTCTGGAAGAA	LOC_Os11g33120
Os.11468.1.S1_at--1151--367	1	Chr11:19087970..19087994 (25 bp)	CTTTGTACAGATCTTCTCCCAGATA	LOC_Os11g33120
Os.11468.1.S1_at--180--333	2	Chr11:19087793..19087817 (25 bp)	CACTTTTTGTGGCTGGTACTGAATT	LOC_Os11g33120
Os.11468.1.S1_at--316--143	1	Chr11:19087758..19087782 (25 bp)	AGAACACACCTGATATTGGAGCACT	LOC_Os11g33120
Os.11468.1.S1_at--456--275	1	Chr11:19087710..19087734 (25 bp)	AAGAACAACCTCATGTCCTATGTCC	LOC_Os11g33120
Os.11468.1.S1_at--156--1011	1	Chr11:19087692..19087716 (25 bp)	TATGTCCACAACCAATGAGCACTGC	LOC_Os11g33120
Os.11468.1.S1_at--608--593	1	Chr11:19087676..19087700 (25 bp)	GAGCACTGCCAACATATTAGGGTTC	LOC_Os11g33120
Os.11468.1.S1_at--374--631	1	Chr11:19087643..19087667 (25 bp)	GATGAGCATGATGGTACCCTCCTGG	LOC_Os11g33120
Os.11468.1.S1_at--1030--927	1	Chr11:19087624..19087648 (25 bp)	TCCTGGCCCACATAGCAACTAGAGT	LOC_Os11g33120
Os.11468.1.S1_at--38--387	1	NONE	CTGTTCCTTCTATTTTATTCCATTG	NONE

Target Sequence

GTATTGCTTGATTGTGGCCAGGCTTGGCCAGATAATNTTCATCGGTTTTTTGCTCTGGAAGAATAATCCAATGCCCCCCT
TTGTACAGATCTTCTCCCAGATAATACTTTGTAATACTTAGAGTAGCCAATTTGATCAAATCAGTTTGTATCTAGTAGCA
TGTAGAGAGTTTCATGGAGGCCTAATCAGGTCNAAANATATCACANNATGTTNGGCCNAGANCAAGAAAANTCATGCCCA
TTGCAAGAAAGAAATTGCACTTTTTGTGGCTGGTACTGAATTGTGGACCTGAAGAACACACCTGATATTGGAGCACTGCA
CATGGAGGTGACCAACAAACAAGAACAACCTCATGTCCTATGTCCACAACCAATGAGCACTGCCAACATATTAGGGTTCT
AGAAGATGATGAGCATGATGGTACCCTCCTGGCCCACATAGCAACTAGAGTAGTTGTCTTTGGTTTTTACTTTTTGGAAT
ATCTGTTCTTTCTGTTCCTTCTATTTTATTCCATTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis