Browse Element(s) Details


Os.11469.1.S1_at

Description gb:AK104524.1
DB_XREF= gi:32989733
TID=Os.11469.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G01, full insert sequence.
FL= gb:AK061807.1 gb:AK068652.1 gb:AK104524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2687011/11Auxin-induced protein PCNT115, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26850OsAffx.3910.1.S1_at11/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.17179.1.A1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.22487.1.S1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26860OsAffx.3911.1.S1_at11/114+15688826..15692255importin like protein, putative, expressed
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11469.1.S1_at--505--2391Chr04:15706022..15706046 (25 bp)
AAACTCACCCCTGCAGAAATGGCTG
LOC_Os04g26870
Os.11469.1.S1_at--1125--5811Chr04:15706079..15706103 (25 bp)
GACCGGTATCCTCTGATGATGGCTA
LOC_Os04g26870
Os.11469.1.S1_at--345--8311Chr04:15706099..15706123 (25 bp)
GGCTAACACTACTTGGCAGGACTCT
LOC_Os04g26870
Os.11469.1.S1_at--776--9291Chr04:15706132..15706156 (25 bp)
TCCCTTGTCGTCTTGGAAATCCGAG
LOC_Os04g26870
Os.11469.1.S1_at--123--6711Chr04:15706184..15706208 (25 bp)
GTTCCTGGTTCAAAATAGCTGGTTC
LOC_Os04g26870
Os.11469.1.S1_at--430--2871Chr04:15706242..15706266 (25 bp)
AAGTGTTTCATCAGACGCGTTGCTT
LOC_Os04g26870
Os.11469.1.S1_at--825--8791Chr04:15706272..15706296 (25 bp)
TGTTCTTCTACATCGCGTGTATTTG
LOC_Os04g26870
Os.11469.1.S1_at--825--10231Chr04:15706293..15706317 (25 bp)
TTTGGAATGAGCTGACCTGTCGATC
LOC_Os04g26870
Os.11469.1.S1_at--558--1771Chr04:15706307..15706331 (25 bp)
ACCTGTCGATCTATGCGTAGCGTGT
LOC_Os04g26870
Os.11469.1.S1_at--341--2051Chr04:15706371..15706395 (25 bp)
ACTTACTTGAGTGAAGCGCCGTTTC
LOC_Os04g26870
Os.11469.1.S1_at--954--4551Chr04:15706386..15706410 (25 bp)
GCGCCGTTTCATAAGCTTGTGCATT
LOC_Os04g26870
Target Sequence 
AAACTCACCCCTGCAGAAATGGCTGAACTCGAGTCTTATGCNAGCAATGTCCATGGCGACCGGTATCCTCTGATGATGGC
TAACACTACTTGGCAGGACTCTGAGACCCCTCCCTTGTCGTCTTGGAAATCCGAGTAAATCNTTTTCGTCTGTTCAAATA
CAGTTCCTGGTTCAAAATAGCTGGTTCAAAATGGAAGAGCGTTGCACAAGATTTCATCAGAAGTGTTTCATCAGACGCGT
TGCTTGCTCCTGTTCTTCTACATCGCGTGTATTTGGAATGAGCTGACCTGTCGATCTATGCGTAGCGTGTTGTGTCATAT
GCTTTCGTGATGTTTAATTTGCGCGTAAAACTTACTTGAGTGAAGCGCCGTTTCATAAGCTTGTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis