Browse Element(s) Details


Os.11488.1.S1_at

Description gb:BI796809
DB_XREF= gi:15848533
DB_XREF=H055H10
CLONE=H055H10
TID=Os.11488.1
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU031990(R3068),D39227(R3068)~similar to Arabidopsis thaliana chromosome 5, At5g12320~unknown protein (OJ1477_F01.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4650011/11Tankyrase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11488.1.S1_at--174--711Chr07:27774711..27774735 (25 bp)
AGGACTTGGTACTCCTTCTGAACGG
LOC_Os07g46500
Os.11488.1.S1_at--802--2571Chr07:27774691..27774715 (25 bp)
AACGGTCCTCTCCTTGACAATGGAT
LOC_Os07g46500
Os.11488.1.S1_at--1109--7971Chr07:27774670..27774694 (25 bp)
GGATGACATATAACCTTGTTCTTAT
LOC_Os07g46500
Os.11488.1.S1_at--984--4291Chr07:27774657..27774681 (25 bp)
CCTTGTTCTTATCTTTTCTGGTACT
LOC_Os07g46500
Os.11488.1.S1_at--243--9471Chr07:27774641..27774665 (25 bp)
TCTGGTACTGTGTATTACTGTCTGT
LOC_Os07g46500
Os.11488.1.S1_at--764--10471Chr07:27774627..27774651 (25 bp)
TTACTGTCTGTGTCACTTGTGATGC
LOC_Os07g46500
Os.11488.1.S1_at--310--4751Chr07:27774604..27774628 (25 bp)
GCTGATATGCTAGTATCTTGGGCAA
LOC_Os07g46500
Os.11488.1.S1_at--459--7631Chr07:27774578..27774602 (25 bp)
GGGAGAACTTGAACCATTACTTAAT
LOC_Os07g46500
Os.11488.1.S1_at--909--3111Chr07:27774556..27774580 (25 bp)
AATATTATCAATTCTGTCGGCAATC
LOC_Os07g46500
Os.11488.1.S1_at--563--7191Chr07:27774541..27774565 (25 bp)
GTCGGCAATCAGCTATTACAATCAA
LOC_Os07g46500
Os.11488.1.S1_at--90--8791Chr07:27774486..27774510 (25 bp)
TGTTATAGGCTATTTGTGCACCAGT
LOC_Os07g46500
Target Sequence 
AGGACTTGGTACTCCTTCTGAACGGTCCTCTCCTTGACAATGGATGACATATAACCTTGTTCTTATCTTTTCTGGTACTG
TGTATTACTGTCTGTGTCACTTGTGATGCTGATATGCTAGTATCTTGGGCAATGGGAGAACTTGAACCATTACTTAATAT
TATCAATTCTGTCGGCAATCAGCTATTACAATCAATGACCTAAAACGATGGACNATGGATATATACTGTTATAGGCTATT
TGTGCACCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis