Browse Element(s) Details


Os.11533.1.S1_at

Description gb:AK121069.1
DB_XREF= gi:37990692
TID=Os.11533.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061G23, full insert sequence.
FL= gb:AK121069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11533.1.S1_at--75--3371Chr02:4135379..4135403 (25 bp)
CACCGCCTAGGTACTCGGGAGCTAG
LOC_Os02g07890
Os.11533.1.S1_at--587--9431Chr02:4135393..4135417 (25 bp)
TCGGGAGCTAGGGTTCTTGGCTTCT
LOC_Os02g07890
Os.11533.1.S1_at--672--3611Chr02:4135408..4135432 (25 bp)
CTTGGCTTCTTGCTATCTATCTAAA
LOC_Os02g07890
Os.11533.1.S1_at--409--8291Chr02:4135411..4135435 (25 bp)
GGCTTCTTGCTATCTATCTAAAGTG
LOC_Os02g07890
Os.11533.1.S1_at--211--3691Chr02:4135424..4135448 (25 bp)
CTATCTAAAGTGTTAGCTTCTTTTT
LOC_Os02g07890
Os.11533.1.S1_at--15--4731Chr02:4135506..4135530 (25 bp)
GCTGTTTTTTGTGTTATGGAACAAA
LOC_Os02g07890
Os.11533.1.S1_at--390--8171Chr02:4135523..4135547 (25 bp)
GGAACAAATTGATGGTATGGCTACT
LOC_Os02g07890
Os.11533.1.S1_at--683--8311Chr02:4135541..4135565 (25 bp)
GGCTACTAAGATCTGTGGTGGCTAT
LOC_Os02g07890
Os.11533.1.S1_at--192--6411Chr02:4135550..4135574 (25 bp)
GATCTGTGGTGGCTATTCATGAGTT
LOC_Os02g07890
Os.11533.1.S1_at--744--8491Chr02:4135559..4135583 (25 bp)
TGGCTATTCATGAGTTTTGATTGAA
LOC_Os02g07890
Os.11533.1.S1_at--229--3511Chr02:4135587..4135611 (25 bp)
CATGATCATGTAGGTTTATGTCAAA
LOC_Os02g07890
Target Sequence 
CACCGCCTAGGTACTCGGGAGCTAGGGTTCTTGGCTTCTTGCTATCTATCTAAAGTGTTAGCTTCTTTTTTTATCTCTTG
TTGTGTTGGAAGACAAAGCAAAGAAAGACTACTTTTGTGCTGTTGCTGCTGTTTTTTGTGTTATGGAACAAATTGATGGT
ATGGCTACTAAGATCTGTGGTGGCTATTCATGAGTTTTGATTGAATTACATGATCATGTAGGTTTATGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis