Browse Element(s) Details


Os.11538.1.S1_at

Description gb:AK062810.1
DB_XREF= gi:32972828
TID=Os.11538.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D12, full insert sequence.
FL= gb:AK062810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11538.1.S1_at--170--4571Chr04:24611756..24611780 (25 bp)
GCGCCGTCATCCTGAGGATGATCGG
LOC_Os04g41900
Os.11538.1.S1_at--914--4431Chr04:24611718..24611742 (25 bp)
GCCATCTTCTGCCTCGAGTGGATCG
LOC_Os04g41900
Os.11538.1.S1_at--1095--10591Chr04:24611712..24611736 (25 bp)
TTCTGCCTCGAGTGGATCGCGCTCG
LOC_Os04g41900
Os.11538.1.S1_at--699--4431Chr04:24611682..24611706 (25 bp)
GCCTTCGTGCTGAGGTACTACGCCT
LOC_Os04g41900
Os.11538.1.S1_at--263--9411Chr04:24611678..24611702 (25 bp)
TCGTGCTGAGGTACTACGCCTACGT
LOC_Os04g41900
Os.11538.1.S1_at--819--6151Chr04:24611671..24611695 (25 bp)
GAGGTACTACGCCTACGTCGACAGG
LOC_Os04g41900
Os.11538.1.S1_at--373--9891Chr04:24611667..24611691 (25 bp)
TACTACGCCTACGTCGACAGGGAGT
LOC_Os04g41900
Os.11538.1.S1_at--90--3931Chr04:24611584..24611608 (25 bp)
CTGGCCATGGCCTTTTCAGGTGTGA
LOC_Os04g41900
Os.11538.1.S1_at--286--10311Chr04:24611571..24611595 (25 bp)
TTTCAGGTGTGATCCATCCAAGAAT
LOC_Os04g41900
Os.11538.1.S1_at--97--591Chr04:24611556..24611580 (25 bp)
ATCCAAGAATGGACTTCTGCGAGAC
LOC_Os04g41900
Os.11538.1.S1_at--937--9471Chr04:24611541..24611565 (25 bp)
TCTGCGAGACAAGTAGCGGGTGTTT
LOC_Os04g41900
Target Sequence 
GCGCCGTCATCCTGAGGATGATCGGCGGGCTCGGCGTGGCCATCTTCTGCCTCGAGTGGATCGCGCTCGCCCTCGCCTTC
GTGCTGAGGTACTACGCCTACGTCGACAGGGAGTNCGGCGGCAACCCNCTGCGCCGCAGCGCCAAGGTCGGCGGCGAGGA
CGGCGCCGGCACCTGGCCATGGCCTTTTCAGGTGTGATCCATCCAAGAATGGACTTCTGCGAGACAAGTAGCGGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis