Browse Element(s) Details


Os.11561.2.S1_a_at

Description gb:AK061545.1
DB_XREF= gi:32971563
TID=Os.11561.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A04, full insert sequence.
FL= gb:AK061545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2201011/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21970Os.53575.1.S1_s_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21970Os.53575.1.S1_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11561.2.S1_a_at--910--9411Chr03:12591598..12591810 (25 bp)
TCGTCGCCCTAGGAGGTCCATCGTA
LOC_Os03g22010
Os.11561.2.S1_a_at--1035--6111Chr03:12591798..12591822 (25 bp)
GAGGTCCATCGTACCCGGTGGAGCT
LOC_Os03g22010
Os.11561.2.S1_a_at--1063--7651Chr03:12591836..12591860 (25 bp)
GGGATGACGACGAACCAAACCATGG
LOC_Os03g22010
Os.11561.2.S1_a_at--371--2551Chr03:12595737..12595761 (25 bp)
AACTGCTCCAGGGTCAACTGATCTG
LOC_Os03g22010
Os.11561.2.S1_a_at--138--2571Chr03:12595752..12595776 (25 bp)
AACTGATCTGTATATCTCTACGAAA
LOC_Os03g22010
Os.11561.2.S1_a_at--155--5591Chr03:12595773..12595797 (25 bp)
GAAATGCGTCGATCTACTGTACCTA
LOC_Os03g22010
Os.11561.2.S1_a_at--890--1891Chr03:12595788..12595812 (25 bp)
ACTGTACCTACGTGGATAGAATCGA
LOC_Os03g22010
Os.11561.2.S1_a_at--1134--6491Chr03:12595864..12595888 (25 bp)
GATATGTATAAGTGCGCAACGTGAT
LOC_Os03g22010
Os.11561.2.S1_a_at--465--5211Chr03:12595892..12595916 (25 bp)
GAATTTATGTAAGGGCTTGTCCGGT
LOC_Os03g22010
Os.11561.2.S1_a_at--739--4931Chr03:12595906..12595930 (25 bp)
GCTTGTCCGGTTTATTGCCATTTTC
LOC_Os03g22010
Os.11561.2.S1_a_at--151--9191Chr03:12595921..12595945 (25 bp)
TGCCATTTTCAACACTATCGACTTT
LOC_Os03g22010
Target Sequence 
TCGTCGCCCTAGGAGGTCCATCGTACCCGGTGGAGCTCGGGAGGAGGGACGGGATGACGACGAACCAAACCATGGCGAAC
ACCAACCCCCAACGCCTTCGACAACGCCTTCTTCACCGACCTCATCGCCGGCCGCGGCCTCCTCCACTCCGACCAGGAGC
TCTACCGCGGCGACGGCTCCGGCACCGACGCCCTCGTCCGCGTCTACGCCGCCAACCCCGCCCGNTTCAACGCCGANTTC
GCCGCCGCCATGGTGCGCATGGGCGCCATCAGGCCGCTCACCGGCACGCAGGGCGAGATCAGGCTCAACTGCTCCAGGGT
CAACTGATCTGTATATCTCTACGAAATGCGTCGATCTACTGTACCTACGTGGATAGAATCGAATCGAATAAGACTAGACT
ATTAATAAGCTAATAAGTGATTAGCGATATCGCGATATGTATAAGTGCGCAACGTGATATTGAATTTATGTAAGGGCTTG
TCCGGTTTATTGCCATTTTCAACACTATCGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11561.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis