Browse Element(s) Details


Os.11564.1.S1_at

Description gb:AK069699.1
DB_XREF= gi:32979723
TID=Os.11564.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027G01, full insert sequence.
FL= gb:AK069699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3842011/11cysteinyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein
LOC_Os09g38470OsAffx.30629.1.A1_at1/119+22139618..22143836hypothetical protein
LOC_Os09g38470OsAffx.22026.3.S1_s_at1/119+22139618..22143836hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006423biological_processcysteinyl-tRNA aminoacylation
GO:0004817molecular_functioncysteine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11564.1.S1_at--1062--9611Chr09:22114187..22114211 (25 bp)
TCATGGACGGTCCTGACGGAACAAC
LOC_Os09g38420
Os.11564.1.S1_at--96--5511Chr09:22114169..22114193 (25 bp)
GAACAACTTGGAGGCCATCTGTACC
LOC_Os09g38420
Os.11564.1.S1_at--1015--471Chr09:22114153..22114177 (25 bp)
ATCTGTACCTCTTTCTGAGCAAGGG
LOC_Os09g38420
Os.11564.1.S1_at--280--7511Chr09:22114128..22114152 (25 bp)
GTGGTTGCCAGTACATGATCTGCGC
LOC_Os09g38420
Os.11564.1.S1_at--927--2351Chr09:22114099..22114123 (25 bp)
AAAGCTCCGGAGTGACCATTTCAAA
LOC_Os09g38420
Os.11564.1.S1_at--492--8911Chr09:22114087..22114111 (25 bp)
TGACCATTTCAAATACCCATCACCA
LOC_Os09g38420
Os.11564.1.S1_at--655--8851Chr09:22114060..22114084 (25 bp)
TGATCCATTCATGAGGAACTGCGAT
LOC_Os09g38420
Os.11564.1.S1_at--539--6231Chr09:22113989..22114013 (25 bp)
GATGGCCTGCATGATTCGGTAGAGT
LOC_Os09g38420
Os.11564.1.S1_at--148--2091Chr09:22113907..22113931 (25 bp)
ACATATTTTGTTCTCGAGTCAGCTG
LOC_Os09g38420
Os.11564.1.S1_at--747--6091Chr09:22113892..22113916 (25 bp)
GAGTCAGCTGATATGGTGCAACATT
LOC_Os09g38420
Os.11564.1.S1_at--218--6831Chr09:22113844..22113868 (25 bp)
GTTTACTGCGCGATACTTTTTAGAA
LOC_Os09g38420
Target Sequence 
TCATGGACGGTCCTGACGGAACAACTTGGAGGCCATCTGTACCTCTTTCTGAGCAAGGGGTGGTTGCCAGTACATGATCT
GCGCAACAAAAGCTCCGGAGTGACCATTTCAAATACCCATCACCACATGATCCATTCATGAGGAACTGCGATGTTTNCCA
GGTTTTGAGAGAAAATCAAGAGAACATCTGACGAATCAGATGGCCTGCATGATTCGGTAGAGTGGATATGAGTTTCTGTC
TGACAGAAGATAGCCAAGTTTTACAGTTTTATTACATCATACATATTTTGTTCTCGAGTCAGCTGATATGGTGCAACATT
TTGCCTATTTTTTTACCTGCAGAGTTTACTGCGCGATACTTTTTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis