Browse Element(s) Details


Os.11583.1.S1_at

Description gb:AK068792.1
DB_XREF= gi:32978817
TID=Os.11583.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013163E23, full insert sequence.
FL= gb:AK068792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4235011/11glutathione synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42290Os.51179.1.S1_at3/1111+24965396..24966733Transferase family protein, expressed
LOC_Os11g42300OsAffx.7384.1.S1_at11/1111+24972795..24974276F-box domain containing protein, expressed
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42340NANA11+24989842..24990264hypothetical protein
LOC_Os11g42350Os.11583.1.S1_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42350Os.38748.1.S1_s_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42360OsAffx.31248.1.S1_x_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.1.S1_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.2.S1_x_at2/1111+24996486..24997173hypothetical protein
LOC_Os11g42370Os.51179.1.S1_at11/1111+25000231..25001814Transferase family protein, expressed
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006750biological_processglutathione biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004363molecular_functionglutathione synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11583.1.S1_at--180--7051Chr11:24995023..24995047 (25 bp)
GTAAAGCAGAGGGTCACTCACCATG
LOC_Os11g42350
Os.11583.1.S1_at--4--6151Chr11:24995031..24995055 (25 bp)
GAGGGTCACTCACCATGCACCATCA
LOC_Os11g42350
Os.11583.1.S1_at--205--371Chr11:24995069..24995093 (25 bp)
ATCAATCTTGATAAGCATATGCTCC
LOC_Os11g42350
Os.11583.1.S1_at--852--1531Chr11:24995082..24995106 (25 bp)
AGCATATGCTCCAGTCAACTTCAAC
LOC_Os11g42350
Os.11583.1.S1_at--1143--2611Chr11:24995104..24995128 (25 bp)
AACCAGTTTCTGAGGCATTCCTGTC
LOC_Os11g42350
Os.11583.1.S1_at--153--6191Chr11:24995115..24995139 (25 bp)
GAGGCATTCCTGTCACACCGTAGAA
LOC_Os11g42350
Os.11583.1.S1_at--291--3291Chr11:24995128..24995152 (25 bp)
CACACCGTAGAATGAATAGACCAAA
LOC_Os11g42350
Os.11583.1.S1_at--944--3052Chr11:24995156..24995180 (25 bp)
AATCTGAAATATTCTTCTCTAGTTT
LOC_Os11g42350
Os.11583.1.S1_at--1144--3151Chr11:24995203..24995227 (25 bp)
AATTGAATCTGTCTTTTGTGATGTC
LOC_Os11g42350
Os.11583.1.S1_at--468--7151Chr11:24995213..24995237 (25 bp)
GTCTTTTGTGATGTCATTCTTGCAG
LOC_Os11g42350
Os.11583.1.S1_at--392--6271Chr11:24995222..24995246 (25 bp)
GATGTCATTCTTGCAGTGAGGAAGC
LOC_Os11g42350
Target Sequence 
GTAAAGCAGAGGGTCACTCACCATGCACCATCACACCAAATATCAAATCAATCTTGATAAGCATATGCTCCAGTCAACTT
CAACCAGTTTCTGAGGCATTCCTGTCACACCGTAGAATGAATAGACCAAAAAAAATCTGAAATATTCTTCTCTAGTTTCT
TCTTCTCTTCTGAAATTTTGAATTGAATCTGTCTTTTGTGATGTCATTCTTGCAGTGAGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis