Browse Element(s) Details


Os.11595.2.S1_at

Description gb:NM_191528.1
DB_XREF= gi:34910139
GEN=B1070A12.13
TID=Os.11595.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1070A12.13 (B1070A12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1070A12.13 (B1070A12.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g401401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11595.2.S1_at--1144--2332Chr01:33627199..33627223 (25 bp)
AAAGAGCGATGCTCTGGTGCTCTCT
NONE
Os.11595.2.S1_at--642--7851Chr01:33628499..33628519 (21 bp)
GGTATGATAAATCCTTTCATCCCTA
NONE
Os.11595.2.S1_at--202--10331Chr01:33628509..33628533 (25 bp)
TTTCATCCCTATCCGAGTACGTAGA
NONE
Os.11595.2.S1_at--868--6991Chr01:33628525..33628549 (25 bp)
GTACGTAGAATCCACTTGAGCCTTA
NONE
Os.11595.2.S1_at--534--571Chr01:33628534..33628558 (25 bp)
ATCCACTTGAGCCTTATCACCGGTG
NONE
Os.11595.2.S1_at--11--2131Chr01:33628563..33628846 (25 bp)
ACAGGCACCCTACAATGAGACATCT
NONE
Os.11595.2.S1_at--535--5671Chr01:33628840..33628864 (25 bp)
GACATCTGAACTGAAATACCGCGAA
NONE
Os.11595.2.S1_at--957--9951Chr01:33628856..33628880 (25 bp)
TACCGCGAATACGTGCTAGCTGGAC
NONE
Os.11595.2.S1_at--241--9991Chr01:33628872..33628896 (25 bp)
TAGCTGGACCCTTGCAAAATCACTG
NONE
Os.11595.2.S1_at--1156--5511Chr01:33628897..33628921 (25 bp)
GAAAACTGGCAGCTACTGGAGTAGA
NONE
Os.11595.2.S1_at--292--5391Chr01:33628920..33628943 (24 bp)
GAAGCACCGGGATCCGAAGCAGCAC
NONE
Target Sequence 
AAAGAGCGATGCTCTGGTGCTCTCTACTGGTATGATAAATCCTTTCATCCCTATCCGAGTACGTAGAATCCACTTGAGCC
TTATCACCGGTGGGGCACAGGCACCCTACAATGAGACATCTGAACTGAAATACCGCGAATACGTGCTAGCTGGACCCTTG
CAAAATCACTGGAAAACTGGCAGCTACTGGAGTAGAAGCACCGGGATCCGAAGCAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11595.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis