Browse Element(s) Details


Os.11625.1.S1_at

Description gb:AK103736.1
DB_XREF= gi:32988945
TID=Os.11625.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138H09, full insert sequence.
FL= gb:AK103736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2786011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein
LOC_Os08g27880OsAffx.17197.1.S1_at11/118+16864916..16865233hypothetical protein
LOC_Os08g27890NANA8+16868352..16870074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27910NANA8+16881750..16883183retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009909biological_processregulation of flower development
GO:0042753biological_processpositive regulation of circadian rhythm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11625.1.S1_at--469--1791Chr08:16858243..16858267 (25 bp)
ACCGACACCGAGTAGAGCGCCTACA
LOC_Os08g27860
Os.11625.1.S1_at--376--9851Chr08:16858264..16858288 (25 bp)
TACAACTCCGGCTATCCGATTTCTT
LOC_Os08g27860
Os.11625.1.S1_at--440--8311Chr08:16858273..16858297 (25 bp)
GGCTATCCGATTTCTTCTCCTTCTC
LOC_Os08g27860
Os.11625.1.S1_at--198--9511Chr08:16858311..16858335 (25 bp)
TCTCGCTTTTTTCTTTCTGTCTAGA
LOC_Os08g27860
Os.11625.1.S1_at--941--6151Chr08:16858367..16858391 (25 bp)
GAGGTAGATTCGGTATCCTGCTAAA
LOC_Os08g27860
Os.11625.1.S1_at--3--7871Chr08:16858378..16858402 (25 bp)
GGTATCCTGCTAAACTCTTTTTCTC
LOC_Os08g27860
Os.11625.1.S1_at--554--10311Chr08:16858416..16858440 (25 bp)
TTTCTCTTGATGTAATTCAGAGCTG
LOC_Os08g27860
Os.11625.1.S1_at--214--3151Chr08:16858429..16858453 (25 bp)
AATTCAGAGCTGAGATGGACATGAC
LOC_Os08g27860
Os.11625.1.S1_at--1021--831Chr08:16858443..16858467 (25 bp)
ATGGACATGACAACAGTAAACACCT
LOC_Os08g27860
Os.11625.1.S1_at--212--7051Chr08:16858458..16858482 (25 bp)
GTAAACACCTGCCTTGTCAGAGATT
LOC_Os08g27860
Os.11625.1.S1_at--535--1731Chr08:16858464..16858488 (25 bp)
ACCTGCCTTGTCAGAGATTAAAGAA
LOC_Os08g27860
Target Sequence 
ACCGACACCGAGTAGAGCGCCTACAACTCCGGCTATCCGATTTCTTCTCCTTCTCGCCCCCATTTNGTTCTCGCTTTTTT
CTTTCTGTCTAGAATTTTAGATTTACTGAGCAGCAGGAGGACAGGAGGTAGATTCGGTATCCTGCTAAACTCTTTTTCTC
TTTTCCCTCTTTTTTTCTCTTGATGTAATTCAGAGCTGAGATGGACATGACAACAGTAAACACCTGCCTTGTCAGAGATT
AAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis