Browse Element(s) Details


Os.11627.1.S1_at

Description gb:AK069899.1
DB_XREF= gi:32979923
TID=Os.11627.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative katanin (P0007F06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full insert sequence.
FL= gb:AK069899.1 gb:AK065017.1 gb:AK062045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4827011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11627.1.S1_at--251--8331Chr01:27987935..27987959 (25 bp)
GGCTCTGATATACGCCTTGTGTGCA
LOC_Os01g48270
Os.11627.1.S1_at--353--6211Chr01:27987908..27987932 (25 bp)
GAGGCGGCAATGCAACCCCTTAGAA
LOC_Os01g48270
Os.11627.1.S1_at--902--3731Chr01:27987243..27987267 (25 bp)
CTAAGGAATACACGGCCATCTGCTC
LOC_Os01g48270
Os.11627.1.S1_at--672--4331Chr01:27987228..27987252 (25 bp)
CCATCTGCTCATCTTCATGTACATA
LOC_Os01g48270
Os.11627.1.S1_at--440--851Chr01:27987179..27987203 (25 bp)
ATGGCAGTCATGTCCTCAGCTAAAG
LOC_Os01g48270
Os.11627.1.S1_at--738--1251Chr01:27987119..27987143 (25 bp)
AGATTGCTGAATTTCCTCCTTGAAG
LOC_Os01g48270
Os.11627.1.S1_at--513--9231Chr01:27987103..27987127 (25 bp)
TCCTTGAAGCTTGAACTGTTCCCTA
LOC_Os01g48270
Os.11627.1.S1_at--1063--7511Chr01:27987073..27987097 (25 bp)
GTGGAAATCCTCCTGACGGAATCTT
LOC_Os01g48270
Os.11627.1.S1_at--313--6471Chr01:27987045..27987069 (25 bp)
GATAAGACTTTTCATTTGCACCTAG
LOC_Os01g48270
Os.11627.1.S1_at--1153--10011Chr01:27987011..27987035 (25 bp)
TAGAATGCTGAATTACCGCTGATGT
LOC_Os01g48270
Os.11627.1.S1_at--901--7051Chr01:27986897..27986921 (25 bp)
GTAATCCTTGCCCTTTCGGAATATG
LOC_Os01g48270
Target Sequence 
GGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCA
AGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACAC
GGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGA
GTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTG
GAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTG
ATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATA
ATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis