Browse Element(s) Details


Os.11632.1.S1_at

Description gb:AK067831.1
DB_XREF= gi:32977849
TID=Os.11632.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121M08, full insert sequence.
FL= gb:AK067831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4259011/11MtN19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed
LOC_Os08g42620Os.53626.1.S1_at11/118+26805990..26809280DHHC zinc finger domain containing protein, expressed
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11632.1.S1_at--1076--2651Chr08:26788019..26788043 (25 bp)
AAGCCGGGATCAGTCAAGGTCAGTG
LOC_Os08g42590
Os.11632.1.S1_at--47--871Chr08:26788044..26788068 (25 bp)
ATGGCGAGGTGCTGACCGTCGTCTC
LOC_Os08g42590
Os.11632.1.S1_at--1027--791Chr08:26788103..26788127 (25 bp)
ATGGGCCTGCTCTACATCCTTGTTG
LOC_Os08g42590
Os.11632.1.S1_at--642--3951Chr08:26788176..26788276 (25 bp)
CGGTTCCATGGTGCTTACCGACATG
LOC_Os08g42590
Os.11632.1.S1_at--28--5671Chr08:26788271..26788295 (25 bp)
GACATGGCTGACGAGCAATCTCTGA
LOC_Os08g42590
Os.11632.1.S1_at--883--10351Chr08:26788357..26788381 (25 bp)
TTTTTGTTGAACTATGGCAGACCAT
LOC_Os08g42590
Os.11632.1.S1_at--137--4311Chr08:26788378..26788402 (25 bp)
CCATAGGAGTAGTTTGCTGTGTCAT
LOC_Os08g42590
Os.11632.1.S1_at--173--1211Chr08:26788420..26788444 (25 bp)
AGTTTCTGATGATCTGTGGCACTAC
LOC_Os08g42590
Os.11632.1.S1_at--38--8491Chr08:26788436..26788460 (25 bp)
TGGCACTACGGCACTAATATATCAA
LOC_Os08g42590
Os.11632.1.S1_at--824--10171Chr08:26788470..26788494 (25 bp)
TATACAAGGGCATTGGCAGACATCT
LOC_Os08g42590
Os.11632.1.S1_at--1084--7611Chr08:26788538..26788562 (25 bp)
GGGAACCAGATGTACAATCTCTTGT
LOC_Os08g42590
Target Sequence 
AAGCCGGGATCAGTCAAGGTCAGTGATGGCGAGGTGCTGACCGTCGTCTCCAACTACAGCAGTGACCGCCAGCACACCGG
CGTCATGGGCCTGCTCTACATCCTTGTTGCAGAGCAAGAACAGCCAGCTCCCAAGCCTGCTCTGTGCTTCAGCTTCCCGG
TTCCATGGTGCTTACCGACATGGCTGACGAGCAATCTCTGAATGTTCAAGTTGGACCTGAAGAAGATGATGCATAGATGT
AAGCAAATAAGTTGCCTGGGTTTTTTTGTTGAACTATGGCAGACCATAGGAGTAGTTTGCTGTGTCATTTTGATGAACCA
TCAGTAGTTTCTGATGATCTGTGGCACTACGGCACTAATATATCAAACTGGGTCATATACAAGGGCATTGGCAGACATCT
TTCTCCAAATAATAGTATTACTCTGAAGAAGCTAGTGAAAACTGGGAACCAGATGTACAATCTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis