Browse Element(s) Details


Os.11662.1.S1_at

Description gb:AK073131.1
DB_XREF= gi:32983154
TID=Os.11662.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000J24, full insert sequence.
FL= gb:AK073131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2997011/11TMV-MP30 binding protein 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29930Os.16741.1.S1_a_at11/119+18206620..18213969Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11662.1.S1_at--68--5591Chr09:18238961..18238985 (25 bp)
GAAATGTCTGCATACGCTACAGCTC
LOC_Os09g29970
Os.11662.1.S1_at--1012--5591Chr09:18239000..18239024 (25 bp)
GACAATCCTACTGACGAGTTCTTGA
LOC_Os09g29970
Os.11662.1.S1_at--701--2631Chr09:18239041..18239065 (25 bp)
AAGACTAAGACTCCAAGCCTTCGTA
LOC_Os09g29970
Os.11662.1.S1_at--149--2651Chr09:18239055..18239079 (25 bp)
AAGCCTTCGTACTCTAATTTGGATT
LOC_Os09g29970
Os.11662.1.S1_at--772--6591Chr09:18239076..18239100 (25 bp)
GATTGAAGCACTGACATGCCCTGTA
LOC_Os09g29970
Os.11662.1.S1_at--474--1191Chr09:18239112..18239136 (25 bp)
AGTAGCTCTATTTTGATGGGCCATC
LOC_Os09g29970
Os.11662.1.S1_at--678--9831Chr09:18239165..18239189 (25 bp)
TAAACTGACAGCTCTTGCTTCCTGG
LOC_Os09g29970
Os.11662.1.S1_at--192--2811Chr09:18239205..18239229 (25 bp)
AAGATCCATGTTTGCGTTCTGTCGG
LOC_Os09g29970
Os.11662.1.S1_at--1082--7691Chr09:18239233..18239257 (25 bp)
GGGTCTGTCTGATGATGCCACTGAG
LOC_Os09g29970
Os.11662.1.S1_at--598--5411Chr09:18239287..18239311 (25 bp)
GAACCGTATGACACTATGACCGAAC
LOC_Os09g29970
Os.11662.1.S1_at--808--8731Chr09:18239331..18239355 (25 bp)
TGTCACACCGTGTACCATTTTAGTG
LOC_Os09g29970
Target Sequence 
GAAATGTCTGCATACGCTACAGCTCTCGCTGCCGCGAAAGACAATCCTACTGACGAGTTCTTGAAGGCAGTAACAGAGGC
AAGACTAAGACTCCAAGCCTTCGTACTCTAATTTGGATTGAAGCACTGACATGCCCTGTACTACCTGAAGGAGTAGCTCT
ATTTTGATGGGCCATCATGTGTTATGCGGGTGTCATAATGCATCTAAACTGACAGCTCTTGCTTCCTGGATCTCACATTT
CAAAAAGATCCATGTTTGCGTTCTGTCGGTCTGGGTCTGTCTGATGATGCCACTGAGCTTGTTATTGTTGTAACTTTGTA
AGCTAAGAACCGTATGACACTATGACCGAACATCTGAACATCTTAGTAGATGTCACACCGTGTACCATTTTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis