Browse Element(s) Details


Os.11670.1.S1_at

Description gb:AK068090.1
DB_XREF= gi:32978108
TID=Os.11670.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132N13, full insert sequence.
FL= gb:AK068090.1 gb:AK058511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2445011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24420NANA11+13417006..13417547hypothetical protein
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11670.1.S1_at--1042--1071Chr11:13444740..13444764 (25 bp)
AGTGGAGGCCCATTTAAGTTCTACA
LOC_Os11g24450
Os.11670.1.S1_at--22--5971Chr11:13444938..13444962 (25 bp)
GAGAAGCGTTTAGGCCTCTAAGAGC
LOC_Os11g24450
Os.11670.1.S1_at--1094--4011Chr11:13444944..13444968 (25 bp)
CGTTTAGGCCTCTAAGAGCTGGTTG
LOC_Os11g24450
Os.11670.1.S1_at--497--5671Chr11:13444994..13445018 (25 bp)
GACATAACAACAGTCCAGGTGTACA
LOC_Os11g24450
Os.11670.1.S1_at--305--3451Chr11:13445004..13445028 (25 bp)
CAGTCCAGGTGTACATAGTCGAGCA
LOC_Os11g24450
Os.11670.1.S1_at--110--7451Chr11:13445012..13445036 (25 bp)
GTGTACATAGTCGAGCAATTGCTTC
LOC_Os11g24450
Os.11670.1.S1_at--491--3991Chr11:13445023..13445047 (25 bp)
CGAGCAATTGCTTCTGATAAACAAA
LOC_Os11g24450
Os.11670.1.S1_at--78--271Chr11:13445059..13445083 (25 bp)
ATATGCTTCCTTGGTGCTTTGAGCC
LOC_Os11g24450
Os.11670.1.S1_at--747--3631Chr11:13445064..13445088 (25 bp)
CTTCCTTGGTGCTTTGAGCCATTGA
LOC_Os11g24450
Os.11670.1.S1_at--1136--9531Chr11:13445123..13445147 (25 bp)
TCATTTCTTGGTAAATTTTGGGCTT
LOC_Os11g24450
Os.11670.1.S1_at--851--9531Chr11:13445128..13445152 (25 bp)
TCTTGGTAAATTTTGGGCTTACATA
LOC_Os11g24450
Target Sequence 
AGTGGAGGCCCATTTAAGTTCTACACTGGCTTTCCTGTGTACTGTGTCAGGATTGCACCACATGCCATGATGACTTGGAT
ATTCCTAAATGAGATCCAGAAGCTCGAGAAGCGTTTAGGCCTCTAAGAGCTGGTTGGTTCGGTCATGCTGTCCTTACCTA
AGACATAACAACAGTCCAGGTGTACATAGTCGAGCAATTGCTTCTGATAAACAAAATCTTTAGCCTATATGCTTCCTTGG
TGCTTTGAGCCATTGACACCAAATGATCACCTCATTTATTGTTCTTTGGATCATTTCTTGGTAAATTTTGGGCTTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis