Browse Element(s) Details


Os.11679.1.S2_a_at

Description gb:AK100664.1
DB_XREF= gi:32985873
TID=Os.11679.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription initiation factor (OSJNBb0009C07.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112E10, full insert sequence.
FL= gb:AK105070.1 gb:AK100664.1 gb:AK071062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1099011/11mutant TFIIF-alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10950Os.40855.4.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40360.1.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10960NANA10+5826471..5826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10970Os.20602.2.S1_x_at11/1110+5831993..5834173hAT family dimerisation domain containing protein
LOC_Os10g10980Os.46848.2.S1_x_at11/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10980Os.46848.1.S1_at4/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11679.1.S2_a_at--324--6571Chr10:5846587..5846611 (25 bp)
GATTCAGAAGACTAATGGCCACAAT
LOC_Os10g10990
Os.11679.1.S2_a_at--522--871Chr10:5846573..5846597 (25 bp)
ATGGCCACAATTATGTCGTCCTTAG
LOC_Os10g10990
Os.11679.1.S2_a_at--616--2231Chr10:5846567..5846591 (25 bp)
ACAATTATGTCGTCCTTAGAGATGA
LOC_Os10g10990
Os.11679.1.S2_a_at--638--7491Chr10:5846518..5846542 (25 bp)
GTGGTGCTTTCTTAAAATGCAACCT
LOC_Os10g10990
Os.11679.1.S2_a_at--653--3011Chr10:5846503..5846527 (25 bp)
AATGCAACCTTTTGCTTTGCTGTGC
LOC_Os10g10990
Os.11679.1.S2_a_at--957--2631Chr10:5846498..5846522 (25 bp)
AACCTTTTGCTTTGCTGTGCCTTTT
LOC_Os10g10990
Os.11679.1.S2_a_at--157--7291Chr10:5846482..5846506 (25 bp)
GTGCCTTTTGGCATAACATGTTTGT
LOC_Os10g10990
Os.11679.1.S2_a_at--71--8171Chr10:5846443..5846467 (25 bp)
GGAAGAATTGGCCTTGTAACCTGAT
LOC_Os10g10990
Os.11679.1.S2_a_at--476--8451Chr10:5846435..5846459 (25 bp)
TGGCCTTGTAACCTGATGTATTTAG
LOC_Os10g10990
Os.11679.1.S2_a_at--611--6411Chr10:5846124..5846148 (25 bp)
GATCTTTTTTAACTTAAGGTCATTG
LOC_Os10g10990
Os.11679.1.S2_a_at--1095--7811Chr10:5846107..5846131 (25 bp)
GGTCATTGATCACTTATCATTGTTG
LOC_Os10g10990
Target Sequence 
GATTCAGAAGACTAATGGCCACAATTATGTCGTCCTTAGAGATGACAAGAAGTGAAGAGCAAAACTAAAGTGGTGCTTTC
TTAAAATGCAACCTTTTGCTTTGCTGTGCCTTTTGGCATAACATGTTTGTAAGATAAGTGTATTGGAAGAATTGGCCTTG
TAACCTGATGTATTTAGGGCCTATTTGGATTGTTACCCTACCAATTTTTTGGTAGTGCCAAAATGTAGGCAAGTTTTGGC
ACTACCAAATCTTTGGTAAAGTAAGATTGCATTGATCATATTTGGTTTGCTACCAATATATAGCTAAAATGTAAAATTGT
AGTGAAGAATATTNTAGATGATACCAAATCTAAATTAGGTATTACCAATGAATAGGCTTCGATCCAAATTAAACACAACT
ACTATTCAAATTACCAAAATATTGGTAGGGCATGTTTTTGGTAACAATCCAAATAGGCCCTTAGATCTTTTTTAACTTAA
GGTCATTGATCACTTATCATTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11679.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis