Browse Element(s) Details


Os.11717.2.S1_at

Description gb:NM_192199.1
DB_XREF= gi:34911481
GEN=P0454A11.15
TID=Os.11717.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0454A11.15 (P0454A11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0454A11.15 (P0454A11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5045011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50460Os.2019.1.S1_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50460Os.2019.2.S1_x_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50470Os.53943.1.S1_at11/111+29304966..29310713regulator of chromosome condensation, putative, expressed
LOC_Os01g50480Os.30572.1.S1_at1/111+29311390..29312863SAM dependent carboxyl methyltransferase family protein
LOC_Os01g50490Os.34136.1.S1_at11/111+29318081..29320130Cytochrome P450 family protein, expressed
LOC_Os01g50500OsAffx.22947.2.S1_x_at10/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.1.S1_x_at9/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.3.S1_x_at5/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_x_at4/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_at2/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11717.2.S1_at--965--1291Chr01:29298564..29298588 (25 bp)
AGAGGTATTACTGTTCGCGATCGAG
LOC_Os01g50450
Os.11717.2.S1_at--842--9911Chr01:29298572..29298596 (25 bp)
TACTGTTCGCGATCGAGTGCTATGC
LOC_Os01g50450
Os.11717.2.S1_at--698--6391Chr01:29298582..29298606 (25 bp)
GATCGAGTGCTATGCCATCGGTCCC
LOC_Os01g50450
Os.11717.2.S1_at--552--3511Chr01:29298597..29298621 (25 bp)
CATCGGTCCCCATGTTTTGAAATCG
LOC_Os01g50450
Os.11717.2.S1_at--331--7791Chr01:29298601..29298625 (25 bp)
GGTCCCCATGTTTTGAAATCGAGAG
LOC_Os01g50450
Os.11717.2.S1_at--470--9371Chr01:29298619..29298672 (25 bp)
TCGAGAGGTCTCATTTGGTGGCCCG
LOC_Os01g50450
Os.11717.2.S1_at--407--1251Chr01:29298765..29298959 (25 bp)
AGATTAAGGACTATTTCGATGTTTG
LOC_Os01g50450
Os.11717.2.S1_at--137--6851Chr01:29298955..29298979 (25 bp)
GTTTGTTAATATAAGCACCGGGCCT
LOC_Os01g50450
Os.11717.2.S1_at--49--6771Chr01:29298959..29298983 (25 bp)
GTTAATATAAGCACCGGGCCTGATT
LOC_Os01g50450
Os.11717.2.S1_at--800--5051Chr01:29298969..29298993 (25 bp)
GCACCGGGCCTGATTTCTTTTGTAG
LOC_Os01g50450
Os.11717.2.S1_at--13--8431Chr01:29298975..29298999 (25 bp)
GGCCTGATTTCTTTTGTAGGAATGA
LOC_Os01g50450
Target Sequence 
AGAGGTATTACTGTTCGCGATCGAGTGCTATGCCATCGGTCCCCATGTTTTGAAATCGAGAGGTCTCATTTGGTGGCCCG
GGGACCTGCAGTGGCTGTGGCTGCAGCAGGGCAGCGGGCAACATGGTGGAATTGCTGTGGGGTATTTGATGCGTTCTCTG
GTTCGGAGAGATAGATTAAGGACTATTTCGATGTTTGTTAATATAAGCACCGGGCCTGATTTCTTTTGTAGGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11717.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis