Browse Element(s) Details


Os.11722.1.S1_a_at

Description gb:AK066368.1
DB_XREF= gi:32976386
TID=Os.11722.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytosolic tRNA-Ala synthetase (OSJNBb0022I16.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full insert sequence.
FL= gb:AK066368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1024411/11Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10230OsAffx.18202.1.S1_at6/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230OsAffx.8356.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230Os.54774.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10244Os.11722.1.S1_a_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_x_at10/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244OsAffx.20054.1.S1_at1/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10260OsAffx.20666.1.S1_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20666.1.S1_x_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.1.S1_x_at2/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.30370.1.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.2.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.15091.1.S1_at1/1110+5410892..5411779expressed protein
LOC_Os10g10270OsAffx.30370.1.S1_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.30370.1.S1_x_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20666.1.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20536.2.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10280Os.46319.1.S1_s_at11/1110+5413861..5417242hypothetical protein
LOC_Os10g10280OsAffx.30371.1.S1_at6/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.26733.2.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.52575.1.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.17829.1.S1_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10290NANA10+5420716..5422699hypothetical protein
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006419biological_processalanyl-tRNA aminoacylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11722.1.S1_a_at--115--571Chr10:5407677..5407701 (25 bp)
ATCCAGAAGGCCGTGAAGTTTGCAA
LOC_Os10g10244
Os.11722.1.S1_a_at--728--10251Chr10:5407695..5407719 (25 bp)
TTTGCAATAGATGCCGCCCAAACTG
LOC_Os10g10244
Os.11722.1.S1_a_at--718--4531Chr10:5407710..5407734 (25 bp)
GCCCAAACTGCTCTTTCTGAAGGAA
LOC_Os10g10244
Os.11722.1.S1_a_at--301--7491Chr10:5407761..5407785 (25 bp)
GTGGGTCTTGACACAAGTGCTATTC
LOC_Os10g10244
Os.11722.1.S1_a_at--444--7931Chr10:5408565..5408589 (25 bp)
GGATTTGCCAATCATGCTATTCAGC
LOC_Os10g10244
Os.11722.1.S1_a_at--364--5031Chr10:5408611..5408635 (25 bp)
GCAGTCATTTATGCTGGTGTGCCTC
LOC_Os10g10244
Os.11722.1.S1_a_at--553--31Chr10:5408666..5408690 (25 bp)
ATTGGTTGACACCATCGATTGCGCC
LOC_Os10g10244
Os.11722.1.S1_a_at--283--9391Chr10:5408680..5408704 (25 bp)
TCGATTGCGCCCCTCAAAGGAAAGG
LOC_Os10g10244
Os.11722.1.S1_a_at--698--3231Chr10:5408715..5408739 (25 bp)
CAAGAATGGAATTGCCCAGGGCCAG
LOC_Os10g10244
Os.11722.1.S1_a_at--474--7611Chr10:5408844..5408868 (25 bp)
GGGAACTGAGGCCTCTCAACTAAAG
LOC_Os10g10244
Os.11722.1.S1_a_at--738--6151Chr10:5408878..5408902 (25 bp)
GAGGTTGCTACCCAGATAGCTTCAA
LOC_Os10g10244
Target Sequence 
ATCCAGAAGGCCGTGAAGTTTGCAATAGATGCCGCCCAAACTGCTCTTTCTGAAGGAAAGCGCTTCTGNGTTGCTCATGT
AGATGTGGGTCTTGACACAAGTGCTATTCGGGAANCAGTTATCAAAGTCAAGGACCAGAAGGATTTGCCAATCATGCTAT
TCAGCACGGATGAAGCCACGAATAAGGCAGTCATTTATGCTGGTGTGCCTCCCAGCGCTGCTAACAGCTTGAAGGTGTTG
GATTGGTTGACACCATCGATTGCGCCCCTCAAAGGAAAGGGAGGTGGTGGCAAGAATGGAATTGCCCAGGGCCAGGGAAC
TGAGGCCTCTCAACTAAAGGAAGCTATGGAGGTTGCTACCCAGATAGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11722.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis