Browse Element(s) Details


Os.11736.1.S1_at

Description gb:AK064977.1
DB_XREF= gi:32974995
TID=Os.11736.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001C02, full insert sequence.
FL= gb:AK064977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2210010/11Rhomboid family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22070OsAffx.2716.1.S1_at8/112+13127053..13132578expressed protein
LOC_Os02g22070Os.24578.1.A1_at5/112+13127053..13132578expressed protein
LOC_Os02g22080NANA2+13133206..13137031transposon protein, putative, Mutator sub-class
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11736.1.S1_at--167--3211NONE
CAATGTGTTTGCACTCTGGGTTCTT
NONE
Os.11736.1.S1_at--491--6871Chr02:13161215..13161239 (25 bp)
GTATTACTTATCTTTGGACCTCGCG
LOC_Os02g22100
Os.11736.1.S1_at--1053--5471Chr02:13161301..13161325 (25 bp)
GAACTTGACAAGCTATCTTCACACG
LOC_Os02g22100
Os.11736.1.S1_at--1116--8651Chr02:13163523..13163547 (25 bp)
TGTGGACTACTTTTCGGCTATTTAA
LOC_Os02g22100
Os.11736.1.S1_at--925--4871Chr02:13163539..13163563 (25 bp)
GCTATTTAACCTGCCCAAGTGTGCA
LOC_Os02g22100
Os.11736.1.S1_at--1076--891Chr02:13163593..13163617 (25 bp)
AGGCTGTGGTTCTTGTTAGGCGACA
LOC_Os02g22100
Os.11736.1.S1_at--1064--5651Chr02:13163614..13163638 (25 bp)
GACAGGCCAGTCCATGGAAATCCAT
LOC_Os02g22100
Os.11736.1.S1_at--1041--9231Chr02:13163634..13163658 (25 bp)
TCCATTGCCATCTTCGTCATAAGCA
LOC_Os02g22100
Os.11736.1.S1_at--69--371Chr02:13163658..13163682 (25 bp)
ATAATTGTGCTTGCTCTTTTCGCCT
LOC_Os02g22100
Os.11736.1.S1_at--640--3671Chr02:13163673..13163697 (25 bp)
CTTTTCGCCTTTGCTTATGGAACAC
LOC_Os02g22100
Os.11736.1.S1_at--51--6551Chr02:13163705..13163729 (25 bp)
GATTTTTCACATGGTTCTGTTTGCA
LOC_Os02g22100
Target Sequence 
CAATGTGTTTGCACTCTGGGTTCTTGCACATAGCACTTGGATGTTGGGTATTACTTATCTTTGGACCTCGCGTGTNTAGA
GCATATGGTCAAACGACATTTTTGCTGATGTACATACTTGGGGGAGTTTGCGGGAACTTGACAAGCTATCTTCACACGTN
TGAGCTAACCGTCTGTGGCACAGACACATCTTGGGGCAACAATTTGTGGACTACTTTTCGGCTATTTAACCTGCCCAAGT
GTGCAGGTNGACAATGCTGCTAAGAAAGGTCAAAAGGCTGTGGTTCTTGTTAGGCGACAGGCCAGTCCATGGAAATCCAT
TGCCATCTTCGTCATAAGCATAATTGTGCTTGCTCTTTTCGCCTTTGCTTATGGAACACAAGCCTAGATTTTTCACATGG
TTCTGTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis