Browse Element(s) Details


Os.11752.1.S1_at

Description gb:AK100857.1
DB_XREF= gi:32986066
TID=Os.11752.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123M01, full insert sequence.
FL= gb:AK100857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3557011/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35550OsAffx.14159.1.S1_at11/114+21473942..21474390hypothetical protein
LOC_Os04g35560Os.28042.1.S1_a_at11/114+21474698..21476978Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11752.1.S1_at--894--51Chr04:21499982..21500006 (25 bp)
ATTGATGCCTTAAGCCCGGATGGTC
LOC_Os04g35570
Os.11752.1.S1_at--50--4271Chr04:21499997..21500021 (25 bp)
CCGGATGGTCCTGGCTGCAAGAAAT
LOC_Os04g35570
Os.11752.1.S1_at--1149--5851Chr04:21500024..21500048 (25 bp)
GAGCCATCAACAGCTGTACCATTTG
LOC_Os04g35570
Os.11752.1.S1_at--417--211Chr04:21500044..21500157 (25 bp)
ATTTGCAGCCAAAGTCTGGGTCTCG
LOC_Os04g35570
Os.11752.1.S1_at--236--1271Chr04:21500167..21500191 (25 bp)
AGATATGCCATTGTTCCTGATGAAA
LOC_Os04g35570
Os.11752.1.S1_at--288--1131Chr04:21500508..21500532 (25 bp)
AGTGCTGTCCCATTTTTGTGCATCC
LOC_Os04g35570
Os.11752.1.S1_at--863--2851Chr04:21500543..21500567 (25 bp)
AAGTGATGATTTCCACGAACCCCTC
LOC_Os04g35570
Os.11752.1.S1_at--1054--7391Chr04:21500571..21500595 (25 bp)
GTGTTGTTGAGATCCAGTACCTATT
LOC_Os04g35570
Os.11752.1.S1_at--812--10211Chr04:21500592..21500616 (25 bp)
TATTAGGGTTATCGCAGCTGCCACT
LOC_Os04g35570
Os.11752.1.S1_at--1097--7171Chr04:21500617..21500641 (25 bp)
GTCTGTAATCGATCACCTGCTTAGA
LOC_Os04g35570
Os.11752.1.S1_at--610--2631Chr04:21500662..21500686 (25 bp)
AACCTGCACCGTTGTGGACATGTGT
LOC_Os04g35570
Target Sequence 
ATTGATGCCTTAAGCCCGGATGGTCCTGGCTGCAAGAAATTAGAGCCATCAACAGCTGTACCATTTGCAGCCAAAGTCTG
GGTCTCGCCATCAGAAAGATATGCCATTGTTCCTGATGAAAAAGTTCCAAATTCAGGTGAAGGCACGGCACGAGGCAACG
GGGCGGACGCAAATGTACCAGAGAACGATGTAAAGAGGATGCGTGTGCATTCGTAGGGGCCTGGACCTCCCAATTTAACT
CCCTAGTACACTATCCAAAAACCCCCTATGTGCAACTGTTTCACCGCACGTTTCCATCCAGTGCTGTCCCATTTTTGTGC
ATCCCATTCTGCCCAAGTGATGATTTCCACGAACCCCTCCTGGTGTTGTTGAGATCCAGTACCTATTAGGGTTATCGCAG
CTGCCACTGTCTGTAATCGATCACCTGCTTAGAGGTGATTTTAGCAAAAAACCAACCTGCACCGTTGTGGACATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis