Browse Element(s) Details


OsAffx.14160.1.S1_at

Description tigr:9632.m03430
TID=OsAffx.14160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3561011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14160.1.S1_at--314--4271Chr04:21516763..21516787 (25 bp)
CCTGTGGCCATTCTGGATTGGTCAA
LOC_Os04g35610
OsAffx.14160.1.S1_at--1005--1051Chr04:21516736..21516760 (25 bp)
AGGGTCGGAGATACTTTCAGTCCAT
LOC_Os04g35610
OsAffx.14160.1.S1_at--713--8631Chr04:21516699..21516723 (25 bp)
TGGGATAATTCCAACCCGAGATCAC
LOC_Os04g35610
OsAffx.14160.1.S1_at--798--1791Chr04:21516686..21516710 (25 bp)
ACCCGAGATCACTACACTTGCATGA
LOC_Os04g35610
OsAffx.14160.1.S1_at--519--8591Chr04:21516651..21516675 (25 bp)
TGGTCGTGCCGGTCATCTGAAAGAA
LOC_Os04g35610
OsAffx.14160.1.S1_at--222--3211Chr04:21516601..21516625 (25 bp)
CAATGGAACCTGATGCTGTGCTCTG
LOC_Os04g35610
OsAffx.14160.1.S1_at--547--7591Chr04:21516577..21516601 (25 bp)
GGGCTTCTCTATTAGGTGCTTGCAG
LOC_Os04g35610
OsAffx.14160.1.S1_at--1036--8831Chr04:21516492..21516516 (25 bp)
TGATAACTCTGGACCCTATGTTCTT
LOC_Os04g35610
OsAffx.14160.1.S1_at--575--6731Chr04:21516473..21516497 (25 bp)
GTTCTTCTCTCAAATATGTACGCTG
LOC_Os04g35610
OsAffx.14160.1.S1_at--271--8351Chr04:21516395..21516419 (25 bp)
GGCGTTAGCAAGCAACCTGGCTGTA
LOC_Os04g35610
OsAffx.14160.1.S1_at--191--2331Chr04:21516350..21516374 (25 bp)
AAAGTAAATGTGTTTCTCGCGAGAG
LOC_Os04g35610
Target Sequence 
CCTGTGGCCATTCTGGATTGGTCAAGGAGGGTCGGAGATACTTTCAGTCCATGACTGAGGATCATGGGATAATTCCAACC
CGAGATCACTACACTTGCATGATTGATTTGCTTGGTCGTGCCGGTCATCTGAAAGAAGTTGAGGAGCTCATAGAGAACAT
GCCAATGGAACCTGATGCTGTGCTCTGGGCTTCTCTATTAGGTGCTTGCAGGCTGCATAAGAACATTGACATGGGGGAAT
GGGCAGCCGGGAAATTATTTGAGCTTGATCCTGATAACTCTGGACCCTATGTTCTTCTCTCAAATATGTACGCTGAGCTT
GGGAAATGGGCAGATGTTTTTAGAGTGAGGAGATCCATGAAGCACAGAGGCGTTAGCAAGCAACCTGGCTGTAGTTGGAT
TGAGATAGGCAGGAAAGTAAATGTGTTTCTCGCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis