Browse Element(s) Details


Os.53966.1.S1_at

Description gb:AK101074.1
DB_XREF= gi:32986283
TID=Os.53966.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024A20, full insert sequence.
FL= gb:AK101074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3560011/11Protein disulfide-isomerase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53966.1.S1_at--590--2831Chr04:21513321..21513345 (25 bp)
AAGTTTGCCCTGATCCTGGAGGAAA
LOC_Os04g35600
Os.53966.1.S1_at--392--1411Chr04:21513122..21513146 (25 bp)
AGACTTCACGGTTGAGGGATATCCA
LOC_Os04g35600
Os.53966.1.S1_at--314--7671Chr04:21513107..21513131 (25 bp)
GGGATATCCAACTATCTACTTCTAT
LOC_Os04g35600
Os.53966.1.S1_at--535--9711Chr04:21513079..21513103 (25 bp)
TCAAGTGGGAACCTTTTGTCGTACG
LOC_Os04g35600
Os.53966.1.S1_at--548--9391Chr04:21513061..21513085 (25 bp)
TCGTACGACGGTGCAAGGACAGCTG
LOC_Os04g35600
Os.53966.1.S1_at--697--6171Chr04:21512944..21512968 (25 bp)
GAGGAGGTAACATCATCATCAGAGC
LOC_Os04g35600
Os.53966.1.S1_at--716--6251Chr04:21512788..21512812 (25 bp)
GATGGTCTCTACACTGCATACAACA
LOC_Os04g35600
Os.53966.1.S1_at--497--9831Chr04:21512698..21512722 (25 bp)
TAAATATGACCCGTGACCCAACCAA
LOC_Os04g35600
Os.53966.1.S1_at--521--6071Chr04:21512669..21512693 (25 bp)
GAGTTTGGTCAGTCTTGTCACCATT
LOC_Os04g35600
Os.53966.1.S1_at--619--8731Chr04:21512654..21512678 (25 bp)
TGTCACCATTCTCTTACAGGAACAC
LOC_Os04g35600
Os.53966.1.S1_at--230--1211Chr04:21512592..21512616 (25 bp)
AGTTTGTTGGAAATCTGCTGTCTAA
LOC_Os04g35600
Target Sequence 
AAGTTTGCCCTGATCCTGGAGGAAATTGCAGTGTCATTGCAAGATGACCAAGATATAGTGATAGCAAAGATGGATGGAAC
TGTGAACGATATACCAACAGACTTCACGGTTGAGGGATATCCAACTATCTACTTCTATTCATCAAGTGGGAACCTTTTGT
CGTACGACGGTGCAAGGACAGCTGAGGAGATCATCAGTTTTATCAACGAGAACAGGGGACCGAAAGCTGGTGCAGCTGCT
GCAGTGGATGAGAAAACCCAGATTGATGCTGTGGAAGAGGAGGTAACATCATCATCAGAGCCTGTTAAAGATGAACTCTG
ATCAAGGACACTGATGGTCTCTACACTGCATACAACAGAGACTACTGAAAATGAGTATGCAGTGCAGTTGTTCAGCAAGA
TGGATAGAAATTCAGAGTGGGTTAAATATGACCCGTGACCCAACCAAGTTTGAGTTTGGTCAGTCTTGTCACCATTCTCT
TACAGGAACACTAGCCATTTTGTTCGAAATTTGTGAACTATACTAGTCAGTTTGTTGGAAATCTGCTGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis