Browse Element(s) Details


Os.27502.1.S1_at

Description gb:AK067679.1
DB_XREF= gi:32977697
TID=Os.27502.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114G19, full insert sequence.
FL= gb:AK067679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3562011/11expressed protein
LOC_Os11g085901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27502.1.S1_at--292--8451Chr04:21520000..21520024 (25 bp)
GGCCAGCTGCTGTCTTAGTGGTGAA
LOC_Os04g35620
Os.27502.1.S1_at--857--4411Chr04:21519999..21520023 (25 bp)
GCCAGCTGCTGTCTTAGTGGTGAAC
LOC_Os04g35620
Os.27502.1.S1_at--706--3391Chr04:21519997..21520021 (25 bp)
CAGCTGCTGTCTTAGTGGTGAACAA
LOC_Os04g35620
Os.27502.1.S1_at--858--4771Chr04:21519995..21520019 (25 bp)
GCTGCTGTCTTAGTGGTGAACAAGA
LOC_Os04g35620
Os.27502.1.S1_at--448--4731Chr04:21519992..21520016 (25 bp)
GCTGTCTTAGTGGTGAACAAGAAAA
LOC_Os04g35620
Os.27502.1.S1_at--974--2772Chr11:4553896..4553915 (20 bp)
AAGATGGTATCAGAACGGTGTTTGT
LOC_Os11g08590
Os.27502.1.S1_at--400--6251Chr04:21519967..21519991 (25 bp)
GATGGTATCAGAACGGTGTTTGTCA
LOC_Os04g35620
Os.27502.1.S1_at--1121--6871Chr04:21519963..21519987 (25 bp)
GTATCAGAACGGTGTTTGTCAGAAC
LOC_Os04g35620
Os.27502.1.S1_at--777--371Chr04:21519961..21519985 (25 bp)
ATCAGAACGGTGTTTGTCAGAACTG
LOC_Os04g35620
Os.27502.1.S1_at--10--5471Chr04:21519957..21519981 (25 bp)
GAACGGTGTTTGTCAGAACTGAGAA
LOC_Os04g35620
Os.27502.1.S1_at--677--7751Chr04:21519953..21519977 (25 bp)
GGTGTTTGTCAGAACTGAGAAATGC
LOC_Os04g35620
Target Sequence 
GGCCAGCTGCTGTCTTAGTGGTGAACAAGAAAAGATGGTATCAGAACGGTGTTTGTCAGAACTGAGAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis