Browse Element(s) Details


OsAffx.14162.1.S1_at

Description tigr:9632.m03432
TID=OsAffx.14162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14162.1.S1_at--536--9791Chr04:21527773..21527797 (25 bp)
TAAGAATCCGTACGTCATGTCTGCG
LOC_Os04g35630
OsAffx.14162.1.S1_at--136--651Chr04:21527802..21527826 (25 bp)
ATGCATACATCAATTTCGCCCTGTT
LOC_Os04g35630
OsAffx.14162.1.S1_at--558--10432Chr11:4605001..4605025 (25 bp)
TTATCCATGCTCATCGGTGTGGCGG
NONE
OsAffx.14162.1.S1_at--621--4931Chr04:21527866..21527890 (25 bp)
GCATTTTAAGTGTCCACTGGCCCTA
LOC_Os04g35630
OsAffx.14162.1.S1_at--178--2591Chr04:21527924..21527948 (25 bp)
AACGTGCTGGCCTTCAATATTGAGT
LOC_Os04g35630
OsAffx.14162.1.S1_at--606--51Chr04:21527942..21527966 (25 bp)
ATTGAGTCATTCACAAGCCTTCCTC
LOC_Os04g35630
OsAffx.14162.1.S1_at--983--6871Chr04:21527972..21527996 (25 bp)
GTATTCAAATACACGCCTGCCATGG
LOC_Os04g35630
OsAffx.14162.1.S1_at--252--7331Chr04:21528042..21528066 (25 bp)
GTGCTTTGATCGTTATTCTTGTCTG
LOC_Os04g35630
OsAffx.14162.1.S1_at--993--9551Chr04:21528058..21528082 (25 bp)
TCTTGTCTGGACATTGGCTACGGAA
LOC_Os04g35630
OsAffx.14162.1.S1_at--587--4851Chr04:21528074..21528190 (25 bp)
GCTACGGAAGATCCTGTGTGCGTTC
LOC_Os04g35630
OsAffx.14162.1.S1_at--211--791Chr04:21528208..21528232 (25 bp)
ATGTGGTACCCTATTGCTCGGATGA
LOC_Os04g35630
Target Sequence 
TAAGAATCCGTACGTCATGTCTGCGGCGAATGCATACATCAATTTCGCCCTGTTATCCATGCTCATCGGTGTGGCGGCTG
GCTCCTTCCCTCGGCATTTTAAGTGTCCACTGGCCCTATCAGGCAATGGAGTACTCCAGGGGTTGCTGTTTAACGTGCTG
GCCTTCAATATTGAGTCATTCACAAGCCTTCCTCCTGAGGTATTCAAATACACGCCTGCCATGGATGAACAGACCATCGC
TATAGTCTGGAGTGTCACTGCAGGAATCAGTGCTTTGATCGTTATTCTTGTCTGGACATTGGCTACGGAAGATCCTGTGT
GCGTTCTGGTTGCCCTGAGGCTCATGTGGTACCCTATTGCTCGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis