Browse Element(s) Details


Os.11767.1.S1_at

Description gb:AK065413.1
DB_XREF= gi:32975431
TID=Os.11767.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021I12, full insert sequence.
FL= gb:AK065413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4724010/11YDA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11767.1.S1_at--908--2811NONE
AAGTTGGCAAAGATATCGTCCATTC
NONE
Os.11767.1.S1_at--347--10171Chr04:27830230..27830254 (25 bp)
TATACAAAGAATCAGATCCTTGGTT
LOC_Os04g47240
Os.11767.1.S1_at--1030--5231Chr04:27830222..27830246 (25 bp)
GAATCAGATCCTTGGTTAAACTAGC
LOC_Os04g47240
Os.11767.1.S1_at--608--6351Chr04:27830216..27830240 (25 bp)
GATCCTTGGTTAAACTAGCTTCTCC
LOC_Os04g47240
Os.11767.1.S1_at--398--10791Chr04:27830211..27830235 (25 bp)
TTGGTTAAACTAGCTTCTCCCGCAT
LOC_Os04g47240
Os.11767.1.S1_at--463--6771Chr04:27830208..27830232 (25 bp)
GTTAAACTAGCTTCTCCCGCATGTA
LOC_Os04g47240
Os.11767.1.S1_at--886--2391Chr04:27830205..27830229 (25 bp)
AAACTAGCTTCTCCCGCATGTACAT
LOC_Os04g47240
Os.11767.1.S1_at--500--10011Chr04:27830201..27830225 (25 bp)
TAGCTTCTCCCGCATGTACATGTTC
LOC_Os04g47240
Os.11767.1.S1_at--427--9311Chr04:27830194..27830218 (25 bp)
TCCCGCATGTACATGTTCTTCAGAT
LOC_Os04g47240
Os.11767.1.S1_at--88--9031Chr04:27830168..27830192 (25 bp)
TGCACCGTGAGCTATCTATAAGACT
LOC_Os04g47240
Os.11767.1.S1_at--1098--4231Chr04:27830164..27830188 (25 bp)
CCGTGAGCTATCTATAAGACTATAA
LOC_Os04g47240
Target Sequence 
AAGTTGGCAAAGATATCGTCCATTCCTGTTAGGCAGAACTCCCGGAAGCATACTACAATTGGCGTACTAACATCTGTCAA
ATGACAAGACTGTATATTGGTACCCTACAGATTGAAGGACCTCCGAAGTAGTAGTTCGCCGCATGTATACTCCTCTTGCC
TTTATATGTAACTTAATTTTCTATTTTCTTCTTGGCGTCCTGATGCCATTGTACAGAGGAACCTCAACTAAGAGCCAAGA
TTTTGCACAGGAGAAACAGTCCAGCCATTCAGTATCCTCTCTCACACAATATCTCACCTGAGGTTGAAACTACTGCTGCA
AGTCAAACTGCATACTGAAAGTATTTTGTAGCAGAACTCAGCCAATGAGCCAACTTATTCACTGTACCAGTTACTCTGGA
AATTTATACAAAGAATCAGATCCTTGGTTAAACTAGCTTCTCCCGCATGTACATGTTCTTCAGATNTGCACCGTGAGCTA
TCTATAAGACTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis