Browse Element(s) Details


Os.11774.1.S1_s_at

Description gb:AK099898.1
DB_XREF= gi:32985107
TID=Os.11774.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114A13, full insert sequence.
FL= gb:AK099898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0376011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03730NANA5+1615497..1615997retrotransposon protein, putative, unclassified
LOC_Os05g03740NANA5+1621601..1622602hypothetical protein
LOC_Os05g03750Os.23808.1.S1_x_at11/115+1630055..1632403expressed protein
LOC_Os05g03750Os.23808.3.S1_x_at9/115+1630055..1632403expressed protein
LOC_Os05g03760Os.11774.1.S1_s_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03760Os.11774.1.S1_x_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03770Os.55734.1.S1_at11/115+1644535..1646940expressed protein
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11774.1.S1_s_at--872--372Chr05:1642170..1642194 (25 bp)
ATCAACAAAGAAGCATGTATACCCA
LOC_Os05g03760
Os.11774.1.S1_s_at--883--3271Chr05:1642175..1642199 (25 bp)
CAAAGAAGCATGTATACCCAAAGGG
LOC_Os05g03760
Os.11774.1.S1_s_at--134--2751Chr05:1642177..1642201 (25 bp)
AAGAAGCATGTATACCCAAAGGGAG
LOC_Os05g03760
Os.11774.1.S1_s_at--724--1451Chr05:1642178..1642202 (25 bp)
AGAAGCATGTATACCCAAAGGGAGC
LOC_Os05g03760
Os.11774.1.S1_s_at--674--4991Chr05:1642182..1642206 (25 bp)
GCATGTATACCCAAAGGGAGCTCTA
LOC_Os05g03760
Os.11774.1.S1_s_at--802--731Chr05:1642184..1642208 (25 bp)
ATGTATACCCAAAGGGAGCTCTAGA
LOC_Os05g03760
Os.11774.1.S1_s_at--897--10171Chr05:1642187..1642211 (25 bp)
TATACCCAAAGGGAGCTCTAGATTG
LOC_Os05g03760
Os.11774.1.S1_s_at--242--311Chr05:1642188..1642212 (25 bp)
ATACCCAAAGGGAGCTCTAGATTGA
LOC_Os05g03760
Os.11774.1.S1_s_at--872--9931Chr05:1642189..1642213 (25 bp)
TACCCAAAGGGAGCTCTAGATTGAT
LOC_Os05g03760
Os.11774.1.S1_s_at--601--4151Chr05:1642191..1642215 (25 bp)
CCCAAAGGGAGCTCTAGATTGATGA
LOC_Os05g03760
Os.11774.1.S1_s_at--747--3291Chr05:1642193..1642217 (25 bp)
CAAAGGGAGCTCTAGATTGATGAAG
LOC_Os05g03760
Target Sequence 
ATCAACAAAGAAGCATGTATACCCAAAGGGAGCTCTAGATTGATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11774.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis