Browse Element(s) Details


Os.11795.1.S1_a_at

Description gb:AK104733.1
DB_XREF= gi:32989942
TID=Os.11795.1
CNT=94
FEA=FLmRNA
TIER=FL+Stack
STK=38
UG=Os.11795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C09, full insert sequence.
FL= gb:AK071750.1 gb:AK104733.1 gb:AK061449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6395011/11Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63910Os.27221.1.A1_at11/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63910Os.9010.4.S1_x_at5/113+36046286..36050827pentatricopeptide, putative, expressed
LOC_Os03g63920Os.9010.3.S1_x_at10/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63920Os.9010.1.S1_x_at6/113+36053038..36058313KAP-2, putative, expressed
LOC_Os03g63930Os.15249.1.S1_at11/113+36058608..36060953Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os03g63940Os.19126.1.S1_at11/113+36063410..36070970protein kinase AKINbetagamma-2, putative, expressed
LOC_Os03g63950Os.11795.1.S1_a_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63950Os.11795.1.S1_s_at11/113+36071028..36073531Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
LOC_Os03g63970Os.48429.1.S1_at11/113+36089654..36091475Gibberellin 20 oxidase 1, putative, expressed
LOC_Os03g63980NANA3+36091846..36092469hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11795.1.S1_a_at--307--8471Chr03:36072894..36072918 (25 bp)
TGGCCGCCATCATTGCTCGACAACA
LOC_Os03g63950
Os.11795.1.S1_a_at--666--4431Chr03:36072899..36072923 (25 bp)
GCCATCATTGCTCGACAACAACGAC
LOC_Os03g63950
Os.11795.1.S1_a_at--595--8051Chr03:36073243..36073267 (25 bp)
GGAGACGGTCATCTCCACAAGGAGA
LOC_Os03g63950
Os.11795.1.S1_a_at--1051--7811Chr03:36073249..36073273 (25 bp)
GGTCATCTCCACAAGGAGACCATCC
LOC_Os03g63950
Os.11795.1.S1_a_at--285--391Chr03:36073328..36073352 (25 bp)
ATCACCATCCTCATTTGCTAATTAT
LOC_Os03g63950
Os.11795.1.S1_a_at--784--1731Chr03:36073331..36073355 (25 bp)
ACCATCCTCATTTGCTAATTATTTC
LOC_Os03g63950
Os.11795.1.S1_a_at--1024--4831Chr03:36073344..36073368 (25 bp)
GCTAATTATTTCTATGCTTGCCCAA
LOC_Os03g63950
Os.11795.1.S1_a_at--126--171Chr03:36073348..36073372 (25 bp)
ATTATTTCTATGCTTGCCCAAGAGT
LOC_Os03g63950
Os.11795.1.S1_a_at--776--631Chr03:36073357..36073381 (25 bp)
ATGCTTGCCCAAGAGTCTCTAAATA
LOC_Os03g63950
Os.11795.1.S1_a_at--948--4911Chr03:36073359..36073383 (25 bp)
GCTTGCCCAAGAGTCTCTAAATATT
LOC_Os03g63950
Os.11795.1.S1_a_at--397--6071Chr03:36073369..36073393 (25 bp)
GAGTCTCTAAATATTACTAGTATTA
LOC_Os03g63950
Target Sequence 
TGGCCGCCATCATTGCTCGACAACAACGACGACGACGCCCAGGCCCAGCTCAAGGATCTGGAGGAGGCCGTCGGCGCCGA
GGACGAGGACACGGTGCTCACCAAGGTGGTGCGCACCAAGGTGTTCGAGATGCCGCCGCTGTCGGTGGAGGAGGCGATGG
AGCAGCTAGTGAATGTGGACCACAACTTCTACGCCTTCAGAGACGAGAAGACCGGGGAGATGAACGTCCTGTACAAGAGG
AAGGAAGGAGGCTTCGGTCTCATCGTCCCCAAGGGAGACGGTCATCTCCACAAGGAGACCATCCCCAACTCTGACCACCA
CCACCCCTCCCTTGCTGCCTAGCCTCTACACCTCCTGCATCACCATCCTCATTTGCTAATTATTTCTATGCTTGCCCAAG
AGTCTCTAAATATTACTAGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11795.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis