Browse Element(s) Details


Os.11805.1.A1_s_at

Description gb:CB659281
DB_XREF= gi:29663006
DB_XREF=OSJNEc16B23.r
CLONE=OSJNEc16B23
TID=Os.11805.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11805 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181138.1 (A.thaliana) putative homeodomain transcription factor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0602011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein
LOC_Os11g06020Os.11805.1.A1_s_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06020OsAffx.30836.1.S1_x_at11/1111+2833897..2840422Associated with HOX family protein, expressed
LOC_Os11g06030OsAffx.7010.1.S1_at10/1111+2839740..2841509hypothetical protein
LOC_Os11g06040Os.35800.1.S1_s_at11/1111+2856728..2864854phox domain-containing protein, putative, expressed
LOC_Os11g06040Os.35800.1.S1_at8/1111+2856728..2864854phox domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11805.1.A1_s_at--737--4011Chr11:2834424..2834448 (25 bp)
CGTCGTTCCTCATGACCAGCAGCAA
LOC_Os11g06020
Os.11805.1.A1_s_at--489--1351Chr11:2834343..2834367 (25 bp)
AGAGCACAAAGTCCTTCGCGGCTCA
LOC_Os11g06020
Os.11805.1.A1_s_at--312--7271Chr11:2834333..2834357 (25 bp)
GTCCTTCGCGGCTCAGCTCATGAGA
LOC_Os11g06020
Os.11805.1.A1_s_at--918--5971Chr11:2834312..2834336 (25 bp)
GAGAGACTTCGTGGCCTAGAATCGA
LOC_Os11g06020
Os.11805.1.A1_s_at--1136--2291Chr11:2834198..2834222 (25 bp)
AAAGGCCTAGACATGAATGCTTAAG
LOC_Os11g06020
Os.11805.1.A1_s_at--184--5031Chr11:2834174..2834198 (25 bp)
GCAGATTAAGCTTAATTGGGCTATA
LOC_Os11g06020
Os.11805.1.A1_s_at--834--10811Chr11:2834159..2834183 (25 bp)
TTGGGCTATAGGTTTTGGGAATGTA
LOC_Os11g06020
Os.11805.1.A1_s_at--488--8511Chr11:2833994..2834018 (25 bp)
TGGAAGTGTATGTGGCATTTTGGCC
LOC_Os11g06020
Os.11805.1.A1_s_at--427--8291Chr11:2833981..2834005 (25 bp)
GGCATTTTGGCCAATCACAGTAATT
LOC_Os11g06020
Os.11805.1.A1_s_at--1149--8431Chr11:2833973..2833997 (25 bp)
GGCCAATCACAGTAATTTCAGTATT
LOC_Os11g06020
Os.11805.1.A1_s_at--626--1171Chr11:2833919..2833943 (25 bp)
AGTATAATGTAGCACTAGCACTTTA
LOC_Os11g06020
Target Sequence 
CGTCGTTCCTCATGACCAGCAGCAACGGCAGCGACGGCGCCGGCCACGTCGCNNNNNNNNNNNNCGGCGGCGGCGGNTAC
GACATGAACATGCAGAGCACAAAGTCCTTCGCGGCTCAGCTCATGAGAGACTTCGTGGCCTAGAATCGAATATGATTATA
CATATTAAATTAGCGCAAAAATTCCAATCAATTAATCCATCAAATTAATTTAGGGCTTGTATAGAAATAAAATGGTAAAA
AGGCCTAGACATGAATGCTTAAGCAGATTAAGCTTAATTGGGCTATAGGTTTTGGGAATGTAAAGATGGGAGCAATGTAT
ATATTGGTATATATAGGGTAGCTTAATTAGTGAAAACCCAAACATNTTACAAGATTTATAGGGTATAGGAAGAGAGGGAG
GGGGGTATACCATGATGTGCAGGGNTATATGGATTTGGATATTGGAAGTGTATGTGGCATTTTGGCCAATCACAGTAATT
TCAGTATTGGTTTTGGGATATTGTAATCTAGATTCTTAGTATAATGTAGCACTAGCACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11805.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis