Browse Element(s) Details


Os.11919.1.S1_at

Description gb:AK100995.1
DB_XREF= gi:32986204
TID=Os.11919.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423A12.20 (P0423A12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full insert sequence.
FL= gb:AK120801.1 gb:AK100995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7079011/11XYPPX repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11919.1.S1_at--65--2211Chr01:41300555..41300579 (25 bp)
ACAACTTCGGGATGGGACTCGGAGC
LOC_Os01g70790
Os.11919.1.S1_at--433--1831Chr01:41300477..41300501 (25 bp)
ACGCGTCGGCGTATGACGCCGGCTA
LOC_Os01g70790
Os.11919.1.S1_at--756--8491Chr01:41300428..41300452 (25 bp)
TGGCTTCGATTTCTAGATGACACAG
LOC_Os01g70790
Os.11919.1.S1_at--823--6311Chr01:41300413..41300437 (25 bp)
GATGACACAGATCGATGCAATGGGT
LOC_Os01g70790
Os.11919.1.S1_at--890--6311Chr01:41300400..41300424 (25 bp)
GATGCAATGGGTGATCTTCGTATAA
LOC_Os01g70790
Os.11919.1.S1_at--759--7711Chr01:41300392..41300416 (25 bp)
GGGTGATCTTCGTATAATCTCGTAT
LOC_Os01g70790
Os.11919.1.S1_at--648--6891Chr01:41300381..41300405 (25 bp)
GTATAATCTCGTATTGGTTTTTGTT
LOC_Os01g70790
Os.11919.1.S1_at--768--10251Chr01:41300350..41300374 (25 bp)
TTTGTTTACTGCCAGGACCAAATTA
LOC_Os01g70790
Os.11919.1.S1_at--911--3811Chr01:41300342..41300366 (25 bp)
CTGCCAGGACCAAATTATGGATGAT
LOC_Os01g70790
Os.11919.1.S1_at--301--10091Chr01:41300312..41300336 (25 bp)
TAGGAGTTTAATTGACACCATATAT
LOC_Os01g70790
Os.11919.1.S1_at--635--271Chr01:41300289..41300313 (25 bp)
ATATGTGGTGAAGCTATGTGATGGA
LOC_Os01g70790
Target Sequence 
ACAACTTCGGGATGGGACTCGGAGCCGGGCTGCTCGGCGGCGCGCTCGGCGGCCTCCTCATCGGAGACGCCATCTCCGAC
GCGTCGGCGTATGACGCCGGCTACGACGCNAGGGTTCGACGACGGCGGTGGCTTCGATTTCTAGATGACACAGATCGATG
CAATGGGTGATCTTCGTATAATCTCGTATTGGTTTTTGTTTTGAATTTTGTTTACTGCCAGGACCAAATTATGGATGATG
TAAATAGGAGTTTAATTGACACCATATATATGTGGTGAAGCTATGTGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis