Browse Element(s) Details


Os.11930.1.S1_at

Description gb:AK103145.1
DB_XREF= gi:32988354
TID=Os.11930.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 14-3-3-like protein (OSJNBa0016I09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120H17, full insert sequence.
FL= gb:AK103145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1111011/1114-3-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0016597molecular_functionamino acid binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
GO:0051117molecular_functionATPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11930.1.S1_at--615--5991Chr01:5929820..5929843 (24 bp)
GAGACTGCTTCCAAAACTGCGCAGA
LOC_Os01g11110
Os.11930.1.S1_at--281--2431Chr01:5929831..5929855 (25 bp)
AAAACTGCGCAGACAGATCTCACTC
LOC_Os01g11110
Os.11930.1.S1_at--298--8931Chr01:5929860..5929884 (25 bp)
TGACCCTATCAGACTTGGTTTAGCT
LOC_Os01g11110
Os.11930.1.S1_at--494--5231Chr01:5929887..5929911 (25 bp)
GAATATATCTGTCTTCTACTGTGAG
LOC_Os01g11110
Os.11930.1.S1_at--712--651Chr01:5929915..5930021 (25 bp)
ATGAACTCACCTGACAAAGCTTGCC
LOC_Os01g11110
Os.11930.1.S1_at--212--10691Chr01:5930017..5930041 (25 bp)
TTGCCAACTTGCTAAGAACGCCTTT
LOC_Os01g11110
Os.11930.1.S1_at--1042--6311Chr01:5930042..5930066 (25 bp)
GATGAAGCTGTTGCGGAGCTTCCCT
LOC_Os01g11110
Os.11930.1.S1_at--868--5911Chr01:5930057..5930081 (25 bp)
GAGCTTCCCTCCCTCAGTGAGGAGA
LOC_Os01g11110
Os.11930.1.S1_at--962--6491Chr01:5930090..5930114 (25 bp)
GATAGTACACTGATCATGCAACTTC
LOC_Os01g11110
Os.11930.1.S1_at--812--6131Chr01:5930116..5930140 (25 bp)
GAGGGATAATCTAGCACTGTGGAAT
LOC_Os01g11110
Os.11930.1.S1_at--663--9831Chr01:5930522..5930640 (25 bp)
TAAAGGTGACCCTGCAGCGTGATGG
LOC_Os01g11110
Target Sequence 
GAGACTGCTTCCAAAACTGCGCAGACAGATCTCACTCCAACTGACCCTATCAGACTTGGTTTAGCTCTGAATATATCTGT
CTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGC
TTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAAT
TCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis